TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACAAAAATCCAGCAGCCTCTGCTCCTGAGTGCTGGGGATTAAAGGCA
TGTACTACTAAACGCAGCTAGTAAATAAACTTTAAAACATGACATGTCTA
CTGAGAATGAAATAATTATAAACTAGCAAAGAGTATAAGACCCTAAAATT
TGAATTAAAAGATGTAATTCTAATTTACTAGTATTGTAGTTCTTAAGTGA
TAATTAACTTATATTTACTTGTTCAAACTGAGGTTAAATTCTATTTGGCA
AACTGATAAAGGAGTATTTCTTTTTATGTAAAAAGGTATTGAGTTTCAAA
AGTTAAGGTTTCACATACAGACATCACATGTCCGTGTAGATATAATGAAG
TCTGTTAAAGTAGTAAGGTTAAATGTAAGGCCTTCAGTAGCAGAGGCCTT
TGAAAAACAGCATTAAAGTCTTAACAATCAGATATGTATGTGACTTGAAC
AATGTTAACAATCTCCAACATAAACAGCATTAGCAAATGGTATCAACTAT
GAGAGTTTTCATTCAACTTCAGCTTCATGCTGCAAAACTGCCACAACATC
TGAAAACAATGAGTAACTACTCTATCAATCAGGTCTTCGATGAATCCTAT
TTGACAATTCATCTATAAAAAGCTATACACAAGTTACCAGATTACTA

TGATGTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCTTATCTCTCCAATCCTTATTGTGTGAGGTT
CATATGTATTTTGATCTTTAGTAACACTTTTTTTTACAAATATGGGTGCC
CTTGCATTTGGTGCATAGATGTTCAGAATTTAGAGTTCATCTTGGTGGAT
TTTTCCTTTAATAAGTATGTAGTGTCCTTCCCCCTCTTCTTTGATAACTT
TTGGTTGAAATCTATTTTAGTGGGTATTTGAATGGCTACTCCAGCTTGTT
TCTTGGGACCATTTACTTGGAAAATTTTTCCCCATCCTTTTACTTTGAGA
GAATGTCTGTGTGTGACTCTGAGTTGTGTTTCCTGCATGCAGCAGAATGG
TGGATCCTGCTTACATATTAGTATGTTAGCCTATGTCTTTATTGGGGGGA
TTGAGTCCATTGGTGTTGAGAGATATTAGGGACCAATGGTAGTTGCTTCC
TGTTATTTTGGTTGTGAGAGTTTTAATTATGTTTGTGTGTTTCTCTTCTC
TTCAGTTTGTTGTGAAAGCATTAACATTTTGCTTTTGGGGGTGTGTTTTC
CCTCCTTGTATTGGACTTTTCCTTCTTATTATTCTCTGCAGGGCTGGATT
AGTAGAAAGATATTGGTTAAATTTGGCTTTATCTTGGAAT

Query= MSMg01no082_p16.b1 MSMg01no082_p16.b1 CHROMAT_FILE:
MSMg01no082_p16.b1 PHD_FILE: MSMg01no082_p16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:32:35 2005
         (615 letters)



>mm_chr2_44581039_44582053
          Length = 1015

 Score = 1151 bits (595), Expect = 0.0
 Identities = 607/611 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacaaaaatccagcagcctctgctcctgagtgctggggattaaaggcatgtacta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacaaaaatccagcagcctctgctcctgagtgctggggattaaaggcatgtacta 264

                                                                       
Query: 65  ctaaacgcagctagtaaataaactttaaaacatgacatgtctactgagaatgaaataatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctaaacgcagctagtaaataaactttaaaacatgacatgtctactgagaatgaaataatt 324

                                                                       
Query: 125 ataaactagcaaagagtataagaccctaaaatttgaattaaaagatgtaattctaattta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ataaactagcaaagagtataagaccctaaaatttgaattaaaagatgtaattctaattta 384

                                                                       
Query: 185 ctagtattgtagttcttaagtgataattaacttatatttacttgttcaaactgaggttaa 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctagtattgtagttcttaagtgataattaacttatatttacttgttcaaactgaggttaa 444

                                                                       
Query: 245 attctatttggcaaactgataaaggagtatttctttttatgtaaaaaggtattgagtttc 304
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 445 attctatttggcaaactgataaaggagtatttctttttatgtaaaaagttattgagtttc 504

                                                                       
Query: 305 aaaagttaaggtttcacatacagacatcacatgtccgtgtagatataatgaagtctgtta 364
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aaaatttaaggtttcacatacagacatcacatgtccgtgtagatataatgaagtctgtta 564

                                                                       
Query: 365 aagtagtaaggttaaatgtaaggccttcagtagcagaggcctttgaaaaacagcattaaa 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagtagtaaggttaaatgtaaggccttcagtagcagaggcctttgaaaaacagcattaaa 624

                                                                       
Query: 425 gtcttaacaatcagatatgtatgtgacttgaacaatgttaacaatctccaacataaacag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 625 gtcttaacaatcagatatgtatgtgacttgaacaatgttaacaatctccaacatacacag 684

                                                                       
Query: 485 cattagcaaatggtatcaactatgagagttttcattcaacttcagcttcatgctgcaaaa 544
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 685 cattagcaaatggtatcaactatgagagttttcatccaacttcagcttcatgctgcaaaa 744

                                                                       
Query: 545 ctgccacaacatctgaaaacaatgagtaactactctatcaatcaggtcttcgatgaatcc 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ctgccacaacatctgaaaacaatgagtaactactctatcaatcaggtcttcgatgaatcc 804

                      
Query: 605 tatttgacaat 615
           |||||||||||
Sbjct: 805 tatttgacaat 815


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 615
Length of database: 1015
Length adjustment: 10
Effective length of query: 605
Effective length of database: 1005
Effective search space:   608025
Effective search space used:   608025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)