BAC Information

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BAC

Clone NameMSMg01-084B07
Chromosome2 (Build37)
Map Location 59,785,784 - 59,786,189
singlet/doubletsinglet
Overlap geneBaz2b
Upstream geneBC062650, Pkp4, LOC625354, 2310032F03Rik, LOC100038999, LOC100039016, Tanc1, Wdsub1
Downstream geneLOC667103, LOC667106, Ldha-ps, LOC100039092, March7, Cd302, LOC625861, Ly75, LOC100039176, Pla2r1, Itgb6, Rbms1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084B07.T7 (MSMg01no084_b07.b1)MSMg01-084B07.TJ (MSMg01no084_b07.g1)
ACCAG304034AG304035
length707705
length of high quality
(start - end)
478 (44 - 521)402 (72 - 473)
definitionCHROMAT_FILE: MSMg01no084_b07.b1 PHD_FILE: MSMg01no084_b07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:00 2005CHROMAT_FILE: MSMg01no084_b07.g1 PHD_FILE: MSMg01no084_b07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTTAGATCCTCCTTGCCACAGCCTTTTCTTCTCTGCTGGCTTTACC
AAAACTACAAAGACTAATTTAAATGAGAGACAGAATAGCTAAACATTGGC
GTTCTCACTGTGAACAAGGACTCTCTGCATCCCAGGCTACCTTTGAACCT
GAGGTCCTCTTGCCTCTGCCTTCACCCCTGCTCCAAGTGCTGCGATCCAG
GCGTGCCTCGCCATGCCTGGCTTCCCTGTTTCAGGTGCCCTGAACCTAGG
ACAAAGAAACTATTCTTGAAATTTGAACAAGAACATGAGATTTACGTGAG
ATTTCTGTTTTGTTTTGTTTTCGATTTTTTGAGGCAGGGTTTTTCTGCCC
TGGCCAACCTGGAGCCCACTTTGCAGAACAGACTGGCCTCGAACTCAGAG
ATTTGCCTGCCTCTGCCTCCCAAATACTGGGATTAAAGTGTGTGCCACCA
CTACCCAGCAGATTTTTTTTTAAACCAGAAGAGATGTGACCTACGAAGGC
ATCTCACCAGGGGAGGAGATAGGGTGGGAATTGCTATGCTCATTCCAGAC
CTCTTTTTGAGTTATGCCCAGTTCATCACTATTCTGATTCTGTCTGGCCA
CTAATGGTCAAGTATTCTGTCACTCTTCCTATACCCGCATTGTTGCACTC
TCTTTTC
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCTAGATAACACAGATGCAAAATTACTAAG
GAAACTGCAGGCTCAAGGTAGGAAGCACTCGTTGTCTGTCACTATTGGTC
ATATGAAAATCCAATACTCATCCTTCCAGTCATTCTGACGTGGGAGTGGT
TGACAACTGCTCTCAGAGGAAACAGAGAGCCCTGCTAATAAGTGGAGGTT
TGTGAATACATACCGTTACCTAAGAGTCTTATGTTATGATTCATCCTCTC
TGGTGTGCTACAGTCGCAAAGTGTGTGTTATGATCTTAAGACTTGGACAG
AGGGCTGGAGAGATGGCTGGTTAAGAGTACTGACTGTCCTTCCAGAGGCC
CTTAGATCAAATCCCAGTAACTACATGGTAGTTCACAACCACCCATAATG
GGATCTGATGCCTTCTTCTGGTGTGTCTGACGGCTACTACCGTACATTTA
CATATATTTTTTACATATAACTATCAAGTTTTTTATAAAACGACTTGTAC
AGAAAGGAATCATTTCGCATTTGTTTGGCATATGTCCCTAAGTTTTGCGG
AGCCTTCCTGCCACATCAATCTCCTTAGCAGCCTCCCACTTTTTGAATTG
TACCTGATAATATTTCCACACCTGTTTACTTTGAATTAAATTCCTGATTA
TTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_b07.g1 MSMg01no084_b07.g1 CHROMAT_FILE:
MSMg01no084_b07.g1 PHD_FILE: MSMg01no084_b07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:00 2005
         (402 letters)



>mm_chr2_59785710_59786511
          Length = 802

 Score =  706 bits (365), Expect = 0.0
 Identities = 395/407 (97%), Gaps = 6/407 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctagataacacagatgcaaaattactaaggaaactgcaggctcaaggtaggaagcactcg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 ctagataacacagatgcaaaattactaaggaaactgcaggctcaaggtaggaagcactcg 421

                                                                       
Query: 61  ttgtctgtcactattggtcatatgaaaatccaatactcatccttccagtca-ttctgacg 119
           ||||||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||
Sbjct: 420 ttgtctgtcactattggtcatataaaaatccaatactcatccttccagt-agttctgacg 362

                                                                       
Query: 120 tgggagtggttgacaactgctctcagaggaaacagagagccctgctaataagtggaggtt 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 361 tgggagtggttgacaactgctctcagaggaaacagagagccctgctaataagtggaggtt 302

                                                                       
Query: 180 tgtgaatacataccgttacctaagagtcttatgttatgattcatcctctctggtgtgcta 239
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 301 tgtgaatacataccgttacctgagagtcttatgttatgattcatcctctctggtgtgcta 242

                                                                       
Query: 240 cagtcgcaaagtgtgtgttatgatcttaagacttggacagagggctggagagatggctgg 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 241 cagtcgcaaagtgtgtgttatgatcttaagacttggacagagggctggagagatggctgg 182

                                                                       
Query: 300 ttaagagtactgactgtccttccaga----ggcccttagatcaaatcccagtaactacat 355
           ||||||| ||||||||||||||||||    ||||||||| ||||||||||||||||||||
Sbjct: 181 ttaagagcactgactgtccttccagatctgggcccttagttcaaatcccagtaactacat 122

                                                          
Query: 356 ggtagttcacaaccacccataatgggatctgatgccttcttctggtg 402
           ||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ggtggctcacaaccacccataatgggatctgatgccttcttctggtg 75


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 402
Length of database: 802
Length adjustment: 9
Effective length of query: 393
Effective length of database: 793
Effective search space:   311649
Effective search space used:   311649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)