BAC Information

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BAC

Clone NameMSMg01-084F19
Chromosome2 (Build37)
Map Location 80,164,229 - 80,164,478
singlet/doubletsinglet
Overlap geneDnajc10
Upstream geneItga4, Cerkl, Neurod1, Ssfa2, Ppp1r1c, Pde1a, LOC668005, Prdx6-rs1
Downstream geneFrzb, Nckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084F19.T7 (MSMg01no084_f19.b1)MSMg01-084F19.TJ (MSMg01no084_f19.g1)
ACCAG304239AG304240
length713711
length of high quality
(start - end)
509 (38 - 546)251 (65 - 315)
definitionCHROMAT_FILE: MSMg01no084_f19.b1 PHD_FILE: MSMg01no084_f19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:22 2005CHROMAT_FILE: MSMg01no084_f19.g1 PHD_FILE: MSMg01no084_f19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:22 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCTG
ATCTTTCCCAGGCTTTTATCATGAATGGGTGTTAGATTTTGTCAAATGCT
TTCTCCGCATCTAACGACATGATCATGTGGTTTTTGTCTTTGAGTTTGTT
TATATAGTGGATTACGTTGATGAATTTCCATATATTAAACCATCCCTGCA
TCCCTGGAATGAAATCTACTTGGTCAGGATGGATGATGGTTTTGATGTGT
TCTTGGATTTGGTTAGCGAGAATTTTATTGAGTATTTTATCATCGATATT
CATAAGGGAAATTGGTCTGAAGTTCTCTATCTTTGTTGGGTCTTTCTGTG
GTTTAGGTATCAGAGTAATTGTACCTTCATAGAATGAATTGGGTAGAGTA
CCTTCTGCTTCTATTTTGTGGAATTGTTTGTGAAGAACTGGAATTAGATC
TTCTTTGAAGGTCTGATAGAACTCTGCACTAAACCCATCTGGTCCTGGGC
TTTTTTTGGTTGGGAGACTATTAATGGCTGCTTCTATTTCTTTACGAGAT
ATAGGATTGTTTAGATCATTAACCTTGATCCTGATTTAACTTTGGGACCT
GGTACCTGTCTAGAAATTTGCTAATCCTGGCGTGGTGGCGCACGCCTTTA
ATCCCAGCACTCGAGAGTCAGAAGCATGTGGATTTCTGAGTTCGAGGCTA
GCCTGTTCTATAA
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXTTTACTTTGCATTTTTAAGTAACTTGCTTTTCAAAG
GTAAAGATCTTACTTAGGAAAAGGGTTTAATTTAATCACTGTAATCTTTA
CTCTGTTGTACAGGTCCCTAGCACACACCATTGATCTCAGTACTTGGAGC
CAGAGGCAGGAGGATACCTGTGTTTTAAAGGCAGGCTTGGTATTCATAGC
AAATTCCAGGCTACCAGGGCTATACAGTGAGACCTGCCTCAAAGATCAAG
CTCAGCGTCTGTGATATGTCCTGGCTTCCTGAGCCTCGCTGTCAGGGGTA
GAAGAGCTGTAATCTCAGCTCTGGTGCTCCTCTTTATCTCCTATGTGCAC
AGACTGGCACAAGCCCTGGCTGTTAGCTCCTGTGTCACACGTATGGCTTC
ATGGCAGTCATTCCCCTACTATGCTGCTACTCATTCAAGTATAGATGTAC
GAGAGCTTGTAAAGTTACATGGGTTTGACATTTGATAAGAACCACAGGAA
GTAAGGTAGTGAACTTATTTACGACTGATTTTTTTTTTTCATTTTGATCT
TACCAAAATGGTTTGTGATTGAAGTGTGCTGCAACTAGGCTTATGTGCTT
TCAGATGCTGCTGTCAATTCTGTGAAACTGTGTTTTGTAAACTTTTACTC
CCCATTATGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_f19.g1 MSMg01no084_f19.g1 CHROMAT_FILE:
MSMg01no084_f19.g1 PHD_FILE: MSMg01no084_f19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:22 2005
         (251 letters)



>mm_chr2_80164029_80164679
          Length = 651

 Score =  484 bits (250), Expect = e-141
 Identities = 250/250 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttactttgcatttttaagtaacttgcttttcaaaggtaaagatcttacttaggaaaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttactttgcatttttaagtaacttgcttttcaaaggtaaagatcttacttaggaaaagg 260

                                                                       
Query: 61  gtttaatttaatcactgtaatctttactctgttgtacaggtccctagcacacaccattga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtttaatttaatcactgtaatctttactctgttgtacaggtccctagcacacaccattga 320

                                                                       
Query: 121 tctcagtacttggagccagaggcaggaggatacctgtgttttaaaggcaggcttggtatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tctcagtacttggagccagaggcaggaggatacctgtgttttaaaggcaggcttggtatt 380

                                                                       
Query: 181 catagcaaattccaggctaccagggctatacagtgagacctgcctcaaagatcaagctca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 catagcaaattccaggctaccagggctatacagtgagacctgcctcaaagatcaagctca 440

                     
Query: 241 gcgtctgtga 250
           ||||||||||
Sbjct: 441 gcgtctgtga 450


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 651
Length adjustment: 9
Effective length of query: 242
Effective length of database: 642
Effective search space:   155364
Effective search space used:   155364
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)