BAC Information

Click to search

BAC

Clone NameMSMg01-084L05
Chromosome2 (Build37)
Map Location 51,314,299 - 51,314,554
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666781, LOC227885, Rnd3, LOC666802
Downstream geneLOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1, Rbm43, LOC100041634, Nmi, Tnfaip6, Rif1, Neb, LOC100041670, Arl5a, Cacnb4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084L05.T7 (MSMg01no084_l05.b1)MSMg01-084L05.TJ (MSMg01no084_l05.g1)
ACCAG304483AG304484
length699697
length of high quality
(start - end)
298 (73 - 370)256 (70 - 325)
definitionCHROMAT_FILE: MSMg01no084_l05.b1 PHD_FILE: MSMg01no084_l05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:48 2005CHROMAT_FILE: MSMg01no084_l05.g1 PHD_FILE: MSMg01no084_l05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:34:48 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAAT
TCTTTCTTTGTTCCTGAAAAGGACACTGGTTGCAATTTCTCATTTGTCAT
TTTGACTTAGATGGTGTATTACTTAGGGTTTTACTGTTGTGAAAAGACAT
CATGACCAAGGCAACTCTTATAAAGGACAGCATTTAATTGGGCTGGCTTA
CAGATTCAGAGGTTCAGTCCATTATAGTCAAGGCAGAAATCCTGGCAGCG
TGCAGACAGGAATGGTGCTGTGGGAGACAGAGTTGGGAGTTCTACATCTT
CTTCTCAAGCAAACCAGAATACTGACTTCTCATGCAGCAATGAGGAGGGT
CTCAAAGCCCACCCCCACAATGACTCATTAAGACCACACCTCTCTCCAAA
GGACACACCTCTTAATAATACCACTCCCTGAGCCTTGCATAGTCAAACCA
CAACATACAGTTTAATCTTGGTGATTTCATACCAGATACTTTTAGATCAG
AGGAATCTTTCTCTGTTTTCAAGGTATCAATACTCTTATGATTCCTGGCC
TGGGGATTATTCTTATGATTCTGCCGTATTAGCTGCCCTTTCCTATGTTC
TATTACACTTTGACTTCAGTGTTTTTTTCCCTTTGTCTAAAATGGACTAC
TGTCCTTTTCACTTTCTCAAAACCTTTTGAACTATCTCCCCTATGTTTG
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXCAGTTGTGACTTGCAGCCCAGGCATTTCAGC
GTAGTCTGGGAACTCAGCACAACAAATTCCCAGTTCAGTCTCAGACTGGC
TTTAGACACTTGGAGGTGGGGCCCACCAGCATGGACTCCTCGGGGGCTAC
CAGTGCCTGTAGGCTTAGTAAAGACTGTAAACTGTTCCAGGCCATCTCAT
CTTTCTTTCGGGTCATTTTTATGTTTTCCGAATTATATTGCTCCTTGCGT
AATTGAATATAAAGAGAACATTTCCAAATGCTTTGCTTTAAAAATGGTCT
TGTAACATATTGGGTGCCCTGACGCCATTTGAAAATGAATTTGTGCTTTG
CTCATGGAAACAAGAAAAATAACTTTCGAGTTCGCAGACCTTCTAAAAGG
ATATTCGGGATTGCAATGAATTCCTACGTTATTTTTTCTCACGTTGCATT
TTGTTCTACGCTATTGGTTAAATTCAGACTTTTCCCGTGTCATGCCTGGC
CAAACCTGAACTGTTTTGTTATTAAAATCACCTGCTGCGCCAGGAAAATG
CGGTCCCTACTTGTAGGGGGAGGATGGCTCTAAATGCCCCTCAACCGGCT
ATTTAGTCTCCCCAGCCCTCTCAGGTGTTGCAATCCCGTTTTTTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_l05.g1 MSMg01no084_l05.g1 CHROMAT_FILE:
MSMg01no084_l05.g1 PHD_FILE: MSMg01no084_l05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:34:48 2005
         (256 letters)



>mm_chr2_51313990_51314645
          Length = 656

 Score =  472 bits (244), Expect = e-137
 Identities = 253/256 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cagttgtgacttgcagcccaggcatttcagcgtagtctgggaactcagcacaacaaattc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagttgtgacttgcagcccaggcatttcagcgtagtctgggaactcagcacaacaaattc 506

                                                                       
Query: 61  ccagttcagtctcagactggctttagacacttggaggtggggcccaccagcatggactcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ccagttcagtctcagactggctttagacacttggaggtggggcccaccagcatggactcc 446

                                                                       
Query: 121 tcgggggctaccagtgcctgtaggcttagtaaagactgtaaactgttccaggccatctca 180
           |||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 445 tcgggggctaccagtgtctgtaggcttagtaaagactgcaaactgttccaggccatctca 386

                                                                       
Query: 181 tctttctttcgggtcatttttatgttttccgaattatattgctccttgcgtaattgaata 240
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 385 tctttctttcgggtcatttttatgttttccgaattatattgctccttgtgtaattgaata 326

                           
Query: 241 taaagagaacatttcc 256
           ||||||||||||||||
Sbjct: 325 taaagagaacatttcc 310


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 256
Length of database: 656
Length adjustment: 9
Effective length of query: 247
Effective length of database: 647
Effective search space:   159809
Effective search space used:   159809
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)