BAC Information

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BAC

Clone NameMSMg01-084O14
Chromosome2 (Build37)
Map Location 102,949,870 - 102,950,376
singlet/doubletsinglet
Overlap genenone
Upstream geneLdlrad3, LOC674202, Trim44, Fjx1, E430002G05Rik, Slc1a2, Cd44, Pdhx, Apip
Downstream geneEhf, Elf5, Cat, Abtb2, Nat10, Caprin1, LOC433458, LOC100042961, LOC100042965, Lmo2, Fbxo3, Cd59b, Cd59a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-084O14.T7 (MSMg01no084_o14.b1)MSMg01-084O14.TJ (MSMg01no084_o14.g1)
ACCAG304636AG304637
length688686
length of high quality
(start - end)
509 (46 - 554)408 (76 - 483)
definitionCHROMAT_FILE: MSMg01no084_o14.b1 PHD_FILE: MSMg01no084_o14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:04 2005CHROMAT_FILE: MSMg01no084_o14.g1 PHD_FILE: MSMg01no084_o14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:04 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTAGAAGTCACAGTGTATGCAAAGATATGAGGTAAGATATCGGG
ACCTGGGATGCAGGTGAGGAAGCCTCTTGGCTAATCTGTGTAAAGCTAGC
CTTTGGGTGAACTTTAGGGTCAACTCACTTCTTCTCAATTAGAAACTGGT
CAATGACAACAGATACAGTCTCTAATTTGACTCAACAATTGTAATGTCCT
CAGTCTGTTTTAGCACATTCTCTACTGTGCCCAGGTGGTCCCAGGTCTCA
CCCAACCTAGACAAACACCTTACAGCCTCATGAATTAAGTATCCCATAGA
AGTCTGCCTATAACTCCTGTACCCATTGCCTTAAAAAAAAAAAAGGCCCC
AGTCAGTAAGTGTCAGCATTACTACATCCACTACAGGGCTTTCCCTTGCT
GTGTGTGCTGGTCAGAAAGCTCAGTGTTTGCATGTTTACAATACTATGTT
GCTGATGGATTTTTAAATCCTCCCCCACAAAACTTGGCACACATATTGTT
AGTATAGTTACTAGCTTTGCAACCAGACTAAGAAATGTCAACTCTTGGCA
CTCTTGAAAACATTTCTTGTAACCAGACTTTTAGCTACTTTATTGGGTTG
CGTTTTTCTACCATCCTGCTCCACCCAGTCCCTTTCAA
CATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTATCTCTGTACTCCATTTT
AAAATATGGTTATTTGGTTCTGGAGTCTAACTTCTTGAGTTCTTTGTATA
TATTGGATATTAGCCCTCTATCAGATGTAGGATTGGTAAAGATCTTTTCC
CAATCTGTTGGTTGTCTTTTTGTCTTATTGACAATCCTTTGCAATTTTAT
GAGGTCCCATTTGTTAATTCTTAATCTTACAGTACAAGCCATTGGTGTAC
TGTTCAGGAATTTTCCCCCTGTGCCCATATCTTTGAGGCTCTTTCCCACT
TTCTCTTCTATAAGTTTCAGTGTCTCTGGTTTTATGTGGAGGTCCTTGAT
CCACTTGGATTTGAGCTTTGTACAAGGAGATAAGAATGGATCAATTCACA
TTCTTTACATGCTAACTACCAGTTGAACCAGCACCATTTGCTGAAAATAC
TGTCTTTTCCCCACTAGGCTCTCTGTCTTAATCATGGTTCCAGCCATTTG
GAGGATGGATTTTTCCAGATTCCAGTTTCTCCAGTAAAATAAGGTCTCTG
GGCTTTGATCTTTACTGCCATGGTTCAGTATTTAGAATTATTATATGACA
CAAAAATCTGTGTTTGTCTGTGAGAGAGTCACTAGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no084_o14.b1 MSMg01no084_o14.b1 CHROMAT_FILE:
MSMg01no084_o14.b1 PHD_FILE: MSMg01no084_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:04 2005
         (509 letters)



>mm_chr2_102949666_102950576
          Length = 911

 Score =  946 bits (489), Expect = 0.0
 Identities = 502/507 (99%), Gaps = 2/507 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactagaagtcacagtgtatgcaaagatatgaggtaagatatcgggacctgggat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactagaagtcacagtgtatgcaaagatatgaggtaagatatcgggacctgggat 264

                                                                       
Query: 65  gcaggtgaggaagcctcttggctaatctgtgtaaagctagcctttgggtgaactttaggg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gcaggtgaggaagcctcttggctaatctgtgtaaagctagcctttgggtgaactttaggg 324

                                                                       
Query: 125 tcaactcacttcttctcaattagaaactggtcaatgacaacagatacagtctctaatttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 325 tcaactcacttcttctcaattagaaactggtcaatgacaacagatacagtctctagtttg 384

                                                                       
Query: 185 actcaacaattgtaatgtcctcagtctgttttagcacattctctactgtgcccaggtggt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actcaacaattgtaatgtcctcagtctgttttagcacattctctactgtgcccaggtggt 444

                                                                       
Query: 245 cccaggtctcacccaacctagacaaacaccttacagcctcatgaattaagtatcccatag 304
           |||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 cccaggtctcacccaacctaaacaaacaccttacagccttatgaattaagtatcccatag 504

                                                                       
Query: 305 aagtctgcctataactcctgtacccattgccttaaaaaaaaaaaa--ggccccagtcagt 362
           |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||
Sbjct: 505 aagtctgcctataactcctgtacccattgccttaaaaaaaaaaaaaaggccccagtcagt 564

                                                                       
Query: 363 aagtgtcagcattactacatccactacagggctttcccttgctgtgtgtgctggtcagaa 422
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagtgtcagcattactacatccactacagggctttcccttgctgtgtgtgctggtcagaa 624

                                                                       
Query: 423 agctcagtgtttgcatgtttacaatactatgttgctgatggatttttaaatcctccccca 482
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 agctcagtgtttgcatgtttacaatactatgttgctgatggatttttaaatcctccccca 684

                                      
Query: 483 caaaacttggcacacatattgttagta 509
           |||||||||||||||||||||||||||
Sbjct: 685 caaaacttggcacacatattgttagta 711


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 509
Length of database: 911
Length adjustment: 10
Effective length of query: 499
Effective length of database: 901
Effective search space:   449599
Effective search space used:   449599
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)