BAC Information

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BAC

Clone NameMSMg01-085B20
Chromosome2 (Build37)
Map Location 86,026,966 - 86,027,178
singlet/doubletsinglet
Overlap genenone
Upstream geneLrrc55, Olfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52
Downstream geneOlfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992, Olfr1052, Olfr1053-ps1, Olfr1054, Olfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-085B20.T7 (MSMg01no085_b20.b1)MSMg01-085B20.TJ (MSMg01no085_b20.g1)
ACCAG304791AG304792
length1,2291,429
length of high quality
(start - end)		213 (117 - 329)---
definitionCHROMAT_FILE: MSMg01no085_b20.b1 PHD_FILE: MSMg01no085_b20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:26 2005CHROMAT_FILE: MSMg01no085_b20.g1 PHD_FILE: MSMg01no085_b20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATGGCCCTAAGACTCATAAGGGAGAGGATCCGCGGAATTCCATTCTTCA
TTGTTGCCTTTAAAATGTCTGTGTGTTCTCTGTAGCAATACTTTGACCCT
TTAACTAGATCGCCCCCAATTTGTTAGCTAAGCTGATCTGTACTGTCATG
AGCATGGAAATGTATTGTAATTTGTGTAATAAGCCAGACACTAAAACATG
ACTACTTTGTAGTCTTCCTCAAATGAGGAAGTCCAAAAGTAACTTTTATA
ATTTTGGTTGTGAGCCTAGCCTTTAACGGCTGATCCATCTCTCAAGCCCA
ACCTCCTGTGTATTTATTAAGCATATTAGAGTCTGAGAACTTTGGGCCAG
CTTGCTGCTGACTCATGAGTTGACTCTGGCTCTTTCTCTTTTCTAGTCTG
GCAGTCAGAACCATGTCTTTGTCCTTGCTGCTCCTTGCGCTTGTTATCTA
CATGTTATCATATCAAGTCCTTCCTTAATACTTGAAACGCAATCTTGTAC
TAAGTTGTCAAATATTCAACTGCGTTCTTTTTGCTTCTAGCTTTTACCTG
ATCTGCCTTATCTACTAATTATCATTTCTTTTTTATTTTTGCTTTCTTCT
TTTTTACTTTATTGTTTATGTTTTTTTTATTTTTTCCATATTACTTATCT
CTTTTTTTTTTTCTTTACATATTTTCCTTTTTTTTCTTTATTCTATTTAT
TCTTTTTTTTCCTTTTCTCTTTTTTTTCTTTCACTTTTTTTTTTTTTTTT
TTCTTCTTGTTTTTTTTCTTCTCTTTCTTTTTTTCTTTTTATTCTTTTTT
TTTTTCTCTTTTTTCTTTTTTTTTTTCTTTTTTTTTTTTTTCTTTCTTTT
TTTTTCTTCCCTTTTTTTTTTTTTTTTTCTTTTTTTTTATTTTCTTCTTT
TTTAATTTTTTTTTTTTTTTCTTTATTCTTTATTTTTTTTTTTTTTTTTT
TTTTTATTTCTTTCCTTTTTTTCTTTACTTCCTTTTCCTTTTCTTTATAT
TTTTTTCTTTTCTTTTCTTTTCTTTTTCCTTTTTACTTTTTCTTTATCTC
ATATCTTTTTCCTTTTCTTTTTTTCTTTATTCTCTTTCCACTTCTTCTTT
TCCTTTTTTTTTTTTTTTTCTTTTTTTTTTTCTTCCTTTTCTTTTTCTTC
TATTCTTCTACTTCTCTTTTTTTTTTTTCTTCTTCCTTCTTCTTATATTT
TTTNCATTTTTTCATTTTTTTCTTATTTG

NTAAGCTAGGTAGCTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTTTGAGATCTAAAGAAAAAACCTGTTTCCGTG
GGATTTTCCCCTTTTTTTTATGCCCCACTGTATCTGGTTAAGACTGTCCT
TTCTATCCTAGTAATAAAACGAACAGAAAAGCCCTGGGATGTACGTTTTG
ACTTTATAATGCTAATTTGTGTTTATTAGTTACCTTCCTATTTGATTTTT
AAGTATTCTGTTGTATTCTTGTCTATCTTTATCTTCAATTACTTCTGATC
TACTTTTTATTATTACTAACATTGATTTTTTATTCTTCTGCTCTCTTTTA
CATATATTTTGTTATATTGCCTCTTTCTCTTTTCATTCCTACCCTCTGCT
TTTTTCTTTTTTTTTTTTTTTCCATCCTTTATATTTTTTTTTTTTCTTTT
TTTTTTCCCCCTTTTTTTTTTTCCCTCCCCCTTTATTTTTCCTTTTTTCT
TTTATTTCATTCTTTTTCTTTTTTTTTCTTCTATTATTTTCCTTTCTATT
TATCTTTTTTTCTTTTTCCTTTCATTTTTTTCTTTTTTAATTTCTTTTTT
TCTTCTTATTTTTTCTTTTTTTTTTTCTTCCTTTTCTTCTTTTTTTTTTT
ATTTTCTTTTATTTTTTTCTCTTTCTCTTATCTCTTTTTTCTCATCCCCT
CTTCTTTTTTTTATTTTTTTTTTTTTTTATTTCTTTTTCTTTTTCCTTTA
TTTATTTCTTTTTTTTTTTCTCTTTTTTTATTCTTCTTTTTATCTTCTTT
GTTTTTTTTTTCCTCCTTTTCCTTTTCTCTTCTTTTCTTCATTTATTTTT
TCTTTTTTCTTCTTTTTTTTTATTTCTTTTTCTTTATTCTTTCTCTCTTT
CTTTTTTTATTTTTCTCTTTCTTTTTTATTTTCTTCTNTATTTTTATTTT
TGCTTTCTTCTTACTTCTTTTTTACTTCTTTTTTTTCTTTTATTTTTATT
TTTTTNTTTTTCTATATTTTCTTCCTTTTCTTTTTTTTTCTTATTATTTT
CTCCTCTTTTTCTTTTTCTTTCTTTTTTTCTTTTATTTATTCTTCTTCCT
TATCTTTTTTTTCTTTCTTTTTTTTAATTATTTTTCTTTTATTCTTTATC
TTAATCCCTTACTCCTATTCTTTAATTATCTCTTCTCATCTTACTGCTTC
TTCTTTATCTTCTTTTATTTCTATTACCTTCTTATCTTTATTTTCCCCCC
CCTTTTATTCTTATCTTTTTCCTTTCTCATCTCTTTTTTTCTCTTTTTCT
TTTCCTATTTATCTCTCTTATCATCTATTTTCTCATCTCTTTCTATTTTT
CTTCACTTCTCACTTACTTTTTATCTTCTTCTATTCTTTATTACTTTAAT
NTTATCTCTCCTCTTTTCNTCTTTCCTCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no085_b20.b1 MSMg01no085_b20.b1 CHROMAT_FILE:
MSMg01no085_b20.b1 PHD_FILE: MSMg01no085_b20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:26 2005
         (213 letters)



>mm_chr2_86026766_86027378
          Length = 613

 Score =  373 bits (193), Expect = e-108
 Identities = 208/213 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   caatttgttagctaagctgatctgtactgtcatgagcatggaaatgtattgtaatttgtg 60
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 413 caatttgttagctaagctgatctttactgtcatgagcatggaaatgtattgtaatttgtg 354

                                                                       
Query: 61  taataagccagacactaaaacatgactactttgtagtcttcctcaaatgaggaagtccaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 353 taataagccagacactaaaacatgactactttgtagtcttcctcaaatgaggaagtcaaa 294

                                                                       
Query: 121 aagtaacttttataattttggttgtgagcctagcctttaacggctgatccatctctcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 293 aagtaacttttataattttggttgtgagcctagcctttaacggctgagccatctctcaag 234

                                            
Query: 181 cccaacctcctgtgtatttattaagcatattag 213
           |||||||||||||| |||||| |||||||||||
Sbjct: 233 cccaacctcctgtgcatttatgaagcatattag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space:   123216
Effective search space used:   123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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