BAC Information

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BAC

Clone NameMSMg01-085C05
Chromosome2 (Build37)
Map Location 138,844,568 - 138,844,764
singlet/doubletsinglet
Overlap genenone
Upstream geneBtbd3
Downstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik, Tasp1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-085C05.T7 (MSMg01no085_c05.b1)MSMg01-085C05.TJ (MSMg01no085_c05.g1)
ACCAG304805AG304806
length1,2741,261
length of high quality
(start - end)
201 (125 - 325)285 (116 - 400)
definitionCHROMAT_FILE: MSMg01no085_c05.b1 PHD_FILE: MSMg01no085_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:30 2005CHROMAT_FILE: MSMg01no085_c05.g1 PHD_FILE: MSMg01no085_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:35:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNCCTACAATGGGCGCTAXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CACTCTTTGCAGAAAGTAATCTTAACTACTGTTTCTACCATAGTAGTGTT
AAGTGTAACCTTTAAATCCTACCCAGAAAAATGGGAGTTAAAAATGAATA
TATATTTAATGACAGAATATAATTATATATATTGAAGTACACATATAAAT
ATAGGTAGCTCATTGACCTTTTGTTAGTGTAGTAATCTATGGCTGCTTCA
GAGAGTAAACTGTGTTGATGCGATAGATAATTGAGGGTAAAGTTCTTTTA
AACTGAGATCAATATAATATACACTGGTCTAGAGAACTTAGAACGAAGTA
ATGTTTGAAAGCCTATGAGAAGAATTATCAATGGCTTTGCTGGGTGACTT
TTTTATATCAAGATGCTTAATGTCATGTTATTGAATTCTAATAATAACCC
CCTATTATTAGGACCCCCCGGGCTCTTTATTTTATACCCGACAAAAGATT
AATGCATCAGTTGCAAGAAGCGATAAAGTCTTTCTAATCGTTCATTAGTA
TTATCTTACCCATTCGATGTCAGGAGTCTTTACATATTTAAAATATTAAA
ACTCTTTGGTATATTATTTGTTATTAACAGTTGTTTCTAGTTCGTATAAT
TAATATTTCGTTTGTTTTATATTCTTGAATATATGAATTGCTTCTTTGTG
CCTTTGTCTTTAAATCACTTTTTTTTGTTTTTTGTTATATTTCTACAACC
TCTGTATTTTTTTTCCTTTTTAATTTTTTTTTTTCTTTTCTTACTTACTT
CTCTTTTTATTATTTTCTTTTTTTTTCTCATACTTTTTTTTTAACTTTAT
TTTTCTTCCTATTTTATTTCTTCTTTTTTCCTTTTTATTTTCATTTATCT
ATTTTCTCTTTTATTCTTTCTAATATAAATTTTACTATATATTTTATACT
CTTTTTTTTTTTTATTTTGATCATTTTCTTTTTATTTTTCTTCTTTCATT
TTTTTCTTATTTATTATTTTTTTATTATACTTATTCTTTTATTTTTTTCT
TTTTTCCTATCTTTATCTTTCTTATCTTTTTTTATTTCTTTATACTTCTA
TTTCGTCTTTTTTTAATTATCTATCTATATTTTATTTTCTTTTACTTTAC
CTTTATTTAATTCCTCTTTTCCTTTTTTATTATTATGTCCTTTTTTGTAT
ATTTACTCTCTATTCTCATCTAACTTATCATTTTTAGATTATTTACACTT
TTACATTTCTCTTCTATCACTTAA
NAAGTTCACTGGATGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCCTCTTATCTCTTTCAGACATTTTCAGAATTGTG
CTGAAACCCTTGACATTTTTTATCAAGCAAATTATAAAGTTCCCAAAGGG
CACCTATAAATAAAATTCTACTACAGTTACAACACATGAATACATTGAAG
AAGAAAGGAGAAAGCTTAAGAACAAAAAGAAGACATGAGACTGTACATCA
AATGAATTAATTTAGATAATAGAAAATAGTAAAATAAATATTTAGTTATA
TATTTGAAAAGCAACATGAATAGTAGTTGTAAATGAAAAAAAATGACCAC
ACCCTCAGTTGCAAGGGTCAAATTCTATGATATTGGCCATAATATAACAC
TGTATTTTAATACGGAAAGTAACAATGAAAGGAAAACAGACACAGAAATT
CACACTTTTTTTCCACAACTGAACTGAGCCCTGTGATCTAGGTGCATACG
CCACCTTCTCCAAATGACGGAGCACGAGAGTCATGACTTCAGTGACTATC
TGGACTATACCATGGGTTCCAGGTCTACCTGAGTCAGTTAGCATGGCCCT
GTTCCAGCAGTCTTTAAAACATATAAATGATTGAGCATATCTTGCCACGT
AAGCCATTGTAGCTTCCACAGATCACAGTTGGGTACGATAGATGACTGAT
GCCTTTTCCTCTAGTACCAATCCCACCTACAAAAAAAAATACTCACTAGA
TGTGAACCCTCTGGGTCTGCATCACGTTGATTTCCTTATGTTCTATGACG
TATTTATGTGATGTTTTCATCCATAGGGCTTTGTCCTTCAGGATAGTCGT
TTCTCATTCTGTAGGTCATCAGCCCCTTTTGAGGTTTTAATTACCTTTTC
TCAGGTTGCCACCTATGATTAACCCTATAAAACATATTTTCCTTATTATT
TCTCTCCGGTATCAATATTATCCTTTATTAATTATTAACGAAAACCTTTT
TTGGTGTTTGTGGGCCCAATCCAATTGTGGAAATTTTTACTAAAAAGTCC
TCCGCTTTAAATAGTTTCAAAAAAACCTGTTTTTTATAAGTGTAATTTTG
AAATATTTCATTAGGTCCTGGTACGGTTTGTAAGTTTTTATTTCTAAATG
TGGTTGTGTTTAAAATTCCTCCAGGCTGTGATTCCCCCATCCTCTTGTCT
CTTCCTTTTGTTCTNATTATTAATCCTAATGTGATCTGGCTTCAATATTA
TGTGTTAACCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no085_c05.b1 MSMg01no085_c05.b1 CHROMAT_FILE:
MSMg01no085_c05.b1 PHD_FILE: MSMg01no085_c05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:35:30 2005
         (201 letters)



>mm_chr2_138844368_138844968
          Length = 601

 Score =  366 bits (189), Expect = e-106
 Identities = 195/197 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agaaaaatgggagttaaaaatgaatatatatttaatgacagaatataattatatatattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 397 agaaaaatgggagttaaaaatgaatatatatttaatgacagaatataattatatatagtg 338

                                                                       
Query: 61  aagtacacatataaatataggtagctcattgaccttttgttagtgtagtaatctatggct 120
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 337 aagtacacatataaatataggtagctcattgaccttttgttaatgtagtaatctatggct 278

                                                                       
Query: 121 gcttcagagagtaaactgtgttgatgcgatagataattgagggtaaagttcttttaaact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 gcttcagagagtaaactgtgttgatgcgatagataattgagggtaaagttcttttaaact 218

                            
Query: 181 gagatcaatataatata 197
           |||||||||||||||||
Sbjct: 217 gagatcaatataatata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 201
Length of database: 601
Length adjustment: 8
Effective length of query: 193
Effective length of database: 593
Effective search space:   114449
Effective search space used:   114449
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)