BAC Information

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BAC

Clone NameMSMg01-085H09
Chromosome2 (Build37)
Map Location 114,106,222 - 114,106,761
singlet/doubletsinglet
Overlap genenone
Upstream gene4930563P21Rik, Fmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770
Downstream geneAtpbd4, LOC100043219, LOC100043222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-085H09.T7 (MSMg01no085_h09.b1)MSMg01-085H09.TJ (MSMg01no085_h09.g1)
ACCAG305037AG305038
length1,1501,211
length of high quality
(start - end)
141 (121 - 261)540 (123 - 662)
definitionCHROMAT_FILE: MSMg01no085_h09.b1 PHD_FILE: MSMg01no085_h09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:36:16 2005CHROMAT_FILE: MSMg01no085_h09.g1 PHD_FILE: MSMg01no085_h09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:36:16 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AGACCCTGAGGGTCCCCAGNGGNNGGGNANGNCCGNAANNAANCCGTCTA
GGTCGCCCAGGAGGNANANCNNGCCAGCAANNAAGAGGAGGAGCTTNCAA
GGNCGGGAGCNGGGCACCTCACTGATGTCTTTTCTCCCTCAGCAGCTTAC
ACAGCATGTTCTAGCACTATATCTCAGGGAGAATGTTTTCTGGTCATTTC
AAGGTGAATTTCACAATGCCCCATAATTGAAGTGAGCATTGCCTTCAGCA
ATAGGGTTTTTTTTTTTACTTATGGAGGGGAGTCAATAACTGCTAGGGAA
TTATCTATATTATGCACAGAACTGAGACGAATTATTTTTTTAGCCCGCGC
NGCNCCGGGAGCCAGAGGGGAAACACAAACCCCCCCCCNNNAGGGAACCA
CGCGCACCGCGCAGCAGAAAGCGGAAACAGAACCAACCAAAAACGCCAGC
GCCAGGGAACCAGCGACAAAACCAGGCCCAAGCAGGCACCGCACGCACGA
GCCACACAAGAGAAACAAACAAACCCCCCCCCACCCGACACGGAAAAACA
AACCAACCCACGACAACCGCAAACCACGCCACACCCAAGCAGAAAACCCG
CGCCCAAACACCCCCCCAAAAAAAGACCCAAAGCCCACCCCAAACACCAA
CAAACCACCAGAACACCACGAAGAACCCACCNCAAACCCCACCACGAAAA
ACACCATTTTTTTTTTTTTTCCGCCCCCCCCACTTCACTTAATGTCTCCT
TCATTCTTTCGTCCTCTCCAATCCCACGAACACAACCTTTTTATTTTTTT
CTTTATTCTCCAAACCCTTCTCACTGTACTATATTTTATTTTTTCTTCCC
TTATTAAATTTATTAATTATTTATTTTTATATAATATATATTATTTTTGT
TATATTTATATTTATTGTCTTTTTTTTTTTTGATTTCTTATACTATTCCT
TATCTTTCTTCCACACTCTTCTATTCTTCACTTCTCTATCATTTCTAATG
TCTTAGTTAATTTTTTTTCTACTGCCTTTCATTCATCTTACACTCTTCTC
ATTCACTTCCACCACTCCTTGTATTCCTTATATTTCTTCTTATTTCCTAC
CATTACTTCTTTTCATTCATCTCCTTATTCTAATATCTTTCTATAATTTT

TTTTTAACATGGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCCTTTAAAGTCTGTGAGTCTAAATTGTTCAGCTGC
CTCATACCCTTTTAATAAAGCTTAAATATCCATAAACAGATACACAGGAG
AACAACAACAACAAAAAAGCTGCTTGCTTTTTTTTCTTCAAAAGGTCACA
CATTTTTCCGTGACATAACAGTAAATAGCATGATAAATGGTTCAGTTTTA
TCATAAATACTAGGAAATAACCATTGACCTTTCACGATAGTTTAAAATAT
AAATGTTTTGGGATTGAAGTTATAGATGCTTTTCAAACCTGAGCAAGAAA
TATTGCCAAACTCTTAAGTGTCAATAAATAGCAAATGTGACAGAAATTTA
TTAATTAGAATGGCATTAGCCATGCTTACGAATATGTATGTTCTTAGAAT
CATACAGTTTACTCATAACATACATCATGTTGAAAATTCACAAATCTGAA
AACAATTCACAGTGGGTCCTGAACTGTTATGAAAATATCTGAAATCTGCT
TGATCTTGCTCTAAGTGATATTGATTTCCTGGCTCAGTGAGCCACCTCAT
AGATTCACAAAATCCCTCAGACTCCAAAGTGCCCTAATTATGTTTAGATT
TTTAACATAGGTAACATTTAACACAAACAATGCTGCGCAAGCTACTTCTG
AGTACTCAACACCGGTGTCCCCCTTCATCTTGCAGAATATCAATCCTTCA
GTCTGCTTCTCTATCCACATGCCATAAAACTCCTTTCCTATGTGAATTTC
AGCAACATACCTCCAGCTGAATTCCTCTTAGTATCTCACTCATCATACAC
TATATCTCGCTCCATCTATTGCCCACATCTACATCTACCCATCCAACCTC
TTGTGAAATTAAAATTCCAATGAAAATCAACTACGTCAATCATTTATGCA
TCACCTCTATTCTTTCCTGCATAACTTGTATTATTTTCATTTATACTCCT
TATTTCCCCTAAGGCACTATATTTTCCCATTATCATGCCTTTCCTCAAAA
AATATTTTATCATCCCATTTATAAACCCCAAAATAAACCTTTAGAAAATG
GTTCCCTTCCTATCCAAATACAAATAAGTCCTTGTTCCTCCCTTTTTATT
CTTCACACTTGTCCACCACAATATCTTTACCTCTCAAAGTCTTCCATAAT
CCTCCATTAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no085_h09.g1 MSMg01no085_h09.g1 CHROMAT_FILE:
MSMg01no085_h09.g1 PHD_FILE: MSMg01no085_h09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:36:16 2005
         (540 letters)



>mm_chr2_114106022_114106961
          Length = 940

 Score = 1006 bits (520), Expect = 0.0
 Identities = 535/540 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   taaatatccataaacagatacacaggagaacaacaacaacaaaaaagctgcttgcttttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 740 taaatatccataaacagatacacaggagaacaacaacaacaaaaaagctgcttgcttttt 681

                                                                       
Query: 61  tttcttcaaaaggtcacacatttttccgtgacataacagtaaatagcatgataaatggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 tttcttcaaaaggtcacacatttttccgtgacataacagtaaatagcatgataaatggtt 621

                                                                       
Query: 121 cagttttatcataaatactaggaaataaccattgacctttcacgatagtttaaaatataa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 cagttttatcataaatactaggaaataaccattgacctttcacgatagtttaaaatataa 561

                                                                       
Query: 181 atgttttgggattgaagttatagatgcttttcaaacctgagcaagaaatattgccaaact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 atgttttgggattgaagttatagatgcttttcaaacctgagcaagaaatattgccaaact 501

                                                                       
Query: 241 cttaagtgtcaataaatagcaaatgtgacagaaatttattaattagaatggcattagcca 300
           ||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||
Sbjct: 500 cttaagtgtcaataaatagcaaatgtgacagaaatttaaaaattagaatggtattagcca 441

                                                                       
Query: 301 tgcttacgaatatgtatgttcttagaatcatacagtttactcataacatacatcatgttg 360
           |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 tgcttaggaatatgtatggtcttagaatcatacagtttactcataacatacatcatgttg 381

                                                                       
Query: 361 aaaattcacaaatctgaaaacaattcacagtgggtcctgaactgttatgaaaatatctga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaaattcacaaatctgaaaacaattcacagtgggtcctgaactgttatgaaaatatctga 321

                                                                       
Query: 421 aatctgcttgatcttgctctaagtgatattgatttcctggctcagtgagccacctcatag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 aatctgcttgatcttgctctaagtgatattgatttcctggctcagtgagccacctcatag 261

                                                                       
Query: 481 attcacaaaatccctcagactccaaagtgccctaattatgtttagatttttaacataggt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 attcacaaaatccctcagactccaaagtgccctaattatgtttagatttttaacataggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 540
Length of database: 940
Length adjustment: 10
Effective length of query: 530
Effective length of database: 930
Effective search space:   492900
Effective search space used:   492900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)