TTATATCGAGAGATGCGCGGAATCCTTATGTTACTTTACATCATTGATAT
GAAGTTCTTAAATTCAACATTGTTTTTCTTTGATTTGTATATAACACACA
CATATTTATAGGTTAGTCTTTATTACATACAAGATAATTTGACTTTCTTA
CATTTGTGTCACAAGTGTGTGTGTATTAGTGGTCAAGTTTTCTAAATTCT
TAATAACTTCATTCATTTTACCATCCATTATTGAAAAAGAAACTTTGAAG
TTCCAAACTATTTCACTGAAGTTTTTATTATTAGTTCTCATTGTCAACAC
ACATAGAGATGCCACAGTCTATTTCTCATTCCCATTTCTTTCAGATTGTC
ATCTAATATGATTTTGATATAGAACTACACGTGTTAACTTACTTTTGCCC
TTTATCCATCTCATCTCCTTTTCTTCATCTTACTTTTTTGATAATCCTAT
TTTTCTAATTTAACATTTTCAACATTTTAATGACTTTATCAACATTTTAA
AATTTTTAAATTTTCTTGGTGGTTGTTCTGCAACAATGTATGCATCTCTT
TTTACCATAATCTATTTCATACTTCTATGAACTTAATTCGAGTATACTCA
TATACCAGTTATGAACTTTATATTCTATAGTGATCACACTAGACTTTATC
ATT

NNNNCCCCNNNNNNNCCCCCTTNCCCCNCCNNCCCTCCCNCNTNCTTTTT
CCTTCCTNACGATGATATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTTCACAAATACAATA
CTTTAGAACTTTTAAAAATTGCCAAGGCCTACATGTGGGTGTCTGTGAAG
AACTATTTGATATAAACTATTAGTATTTACCTCAGAAGGCATGGTGTTAG
TGGTATCTGTAAAACTGAAATGCCATCCCCCAGCTCTTACCTTCTCTTAT
CTTGACCTACCCCCCTATCTCCAGTTCGATTCTTGTTGGTTTGTGACAAC
TAAGACACGGCAGAGTGAATTTATATCTACACCAAGATCTGCTTCGTCTT
TAAAAAGCCCCTATAGTTGGCCTATTTCCTATTCACATAAAAGGAAAACA
GAACCAGAAAGACATGAAAGGATGATTCCATTTTACCCTTTTATAGTATC
CTGCATGCATTTCAAAGGTAGTGGTGCATACCTGTTAATGTGGATGATAT
CAAAGACTGGGATACTTCAATTTGTTGGGCTCTTTTCTAAATAGCCTACA
ATTACAAATCTGCGCCTGCTATGATTCTGCCTATTTCCTTTCACCCATTT
GACTTCTGAGAGACATTCATAGGTCAAGGAGAGAGGTGTTATCACTGCTA
GGAGTTTCTGTAAACCATTCTACTCTACTCCCCATGCAGCTGCTA

Query= MSMg01no086_e10.b1 MSMg01no086_e10.b1 CHROMAT_FILE:
MSMg01no086_e10.b1 PHD_FILE: MSMg01no086_e10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:57 2005
         (589 letters)



>mm_chr2_107258703_107259691
          Length = 989

 Score = 1116 bits (577), Expect = 0.0
 Identities = 586/589 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcattgatatgaagttcttaaattcaacattgtttttctttgatttgtatataacacaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 610 tcattgatatgaagttcttaaattcaacattgtttttctttgatttgtatacaacacaca 551

                                                                       
Query: 61  catatttataggttagtctttattacatacaagataatttgactttcttacatttgtgtc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 550 catatttataggttagtctttattacatacaagataatttgactttcttacatttgtgtc 491

                                                                       
Query: 121 acaagtgtgtgtgtattagtggtcaagttttctaaattcttaataacttcattcatttta 180
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 acaagtgtatgtgtattagtggtcaagttttctaaattcttaataacttcattcatttta 431

                                                                       
Query: 181 ccatccattattgaaaaagaaactttgaagttccaaactatttcactgaagtttttatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 ccatccattattgaaaaagaaactttgaagttccaaactatttcactgaagtttttatta 371

                                                                       
Query: 241 ttagttctcattgtcaacacacatagagatgccacagtctatttctcattcccatttctt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ttagttctcattgtcaacacacatagagatgccacagtctatttctcattcccatttctt 311

                                                                       
Query: 301 tcagattgtcatctaatatgattttgatatagaactacacgtgttaacttacttttgccc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 tcagattgtcatctaatatgattttgatatagaactacacgtgttaacttacttttgccc 251

                                                                       
Query: 361 tttatccatctcatctccttttcttcatcttacttttttgataatcctatttttctaatt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tttatccatctcatctccttttcttcatcttacttttttgataatcctatttttctaatt 191

                                                                       
Query: 421 taacattttcaacattttaatgactttatcaacattttaaaatttttaaattttcttggt 480
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 190 taacattttcaacattttaatgactttatcaatattttaaaatttttaaattttcttggt 131

                                                                       
Query: 481 ggttgttctgcaacaatgtatgcatctctttttaccataatctatttcatacttctatga 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 ggttgttctgcaacaatgtatgcatctctttttaccataatctatttcatacttctatga 71

                                                            
Query: 541 acttaattcgagtatactcatataccagttatgaactttatattctata 589
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 70  acttaattcgagtatactcatataccagttatgaactttatattctata 22


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 589
Length of database: 989
Length adjustment: 10
Effective length of query: 579
Effective length of database: 979
Effective search space:   566841
Effective search space used:   566841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no086_e10.g1 MSMg01no086_e10.g1 CHROMAT_FILE:
MSMg01no086_e10.g1 PHD_FILE: MSMg01no086_e10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:37:57 2005
         (324 letters)



>mm_chr2_107124903_107125627
          Length = 725

 Score =  567 bits (293), Expect = e-166
 Identities = 317/325 (97%), Gaps = 1/325 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttttcacaaatacaatactttagaacttttaaaaattgccaaggcctacatgtgggtg 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 201 atttttcacaaatacaatactttagaactttttaaaattgccaaggcctacatgtgggtg 260

                                                                       
Query: 61  tctgtgaagaactatttgatataaactattagtatttacctcagaaggcatggtgttagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgtgaagaactatttgatataaactattagtatttacctcagaaggcatggtgttagt 320

                                                                       
Query: 121 ggtatctgtaaaactgaaatgccatcccccagctcttaccttctcttatcttgacctacc 180
           |||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||
Sbjct: 321 ggtatctgtaaaactgaaatgccatctcgcagctcttaccttctcttatcttgacctacc 380

                                                                       
Query: 181 cccc-tatctccagttcgattcttgttggtttgtgacaactaagacacggcagagtgaat 239
           |||| ||||| |||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct: 381 ccccctatcttcagttcgattcttgttggtttgtgacaagtaagacacggcagggtgaat 440

                                                                       
Query: 240 ttatatctacaccaagatctgcttcgtctttaaaaagcccctatagttggcctatttcct 299
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 441 ttatatctacaccaagatctgcttcgtctttaaaaagtccctatagttggcctatttcct 500

                                    
Query: 300 attcacataaaaggaaaacagaacc 324
           |||||||||||||||||||||||||
Sbjct: 501 attcacataaaaggaaaacagaacc 525


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 324
Length of database: 725
Length adjustment: 9
Effective length of query: 315
Effective length of database: 716
Effective search space:   225540
Effective search space used:   225540
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)