Query= MSMg01no086_f03.b1 MSMg01no086_f03.b1 CHROMAT_FILE:
MSMg01no086_f03.b1 PHD_FILE: MSMg01no086_f03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:01 2005
(366 letters)
>mm_chr2_53518163_53518928
Length = 766
Score = 677 bits (350), Expect = 0.0
Identities = 362/366 (98%)
Strand = Plus / Plus
Query: 1 agggtttgaatgaattacctttcagcctaagcttttccatctgtaagataaggatgatga 60
|||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 201 agggtttgaatgaattgcctttcagcctaagcttttccatctgtaagataaggataatga 260
Query: 61 cactacctcatgaggtacttgtgattgatcattggataataatacctataaagagctatg 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tactacctcatgaggtacttgtgattgatcattggataataatacctataaagagctatg 320
Query: 121 aagaatgatttcttcatatgagggctcaaaaagctattaccatctagggaaatgtttgac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aagaatgatttcttcatatgagggctcaaaaagctattaccatctagggaaatgtttgac 380
Query: 181 atttctaaatagctgttcaaatgtttcattcaacttctctcaaaaataaagtaatggtcc 240
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 381 atttctaaatagctgttcaaatgttttattcaacttctctcaaaaataaagtaatggtcc 440
Query: 241 acatgctttagtctgtgactttctcattactctcttgtccttccctaagtctgtttcaca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acatgctttagtctgtgactttctcattactctcttgtccttccctaagtctgtttcaca 500
Query: 301 ttctgaaatttccatggcccattcttcaagaggagcaggctgagttggtgaaaataacag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttctgaaatttccatggcccattcttcaagaggagcaggctgagttggtgaaaataacag 560
Query: 361 tgacat 366
||||||
Sbjct: 561 tgacat 566
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space: 270249
Effective search space used: 270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no086_f03.g1 MSMg01no086_f03.g1 CHROMAT_FILE:
MSMg01no086_f03.g1 PHD_FILE: MSMg01no086_f03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:38:01 2005
(517 letters)
>mm_chr2_53667444_53668359
Length = 916
Score = 905 bits (468), Expect = 0.0
Identities = 501/516 (97%), Gaps = 8/516 (1%)
Strand = Plus / Minus
Query: 2 tgtatgagtaatatatttaataatttaataattccaaccatggtttctgtctgattacac 61
|||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct: 694 tgtatgagtactatattta-------cataattccaaccatggtttctgtctgattacac 642
Query: 62 ttttcccatgctcccaacaccatcacaaattcataacatacttattctttactgatgtta 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 641 ttttcccatgctcccaacaccatcacaaattcataacatacttattctttactgatgtta 582
Query: 122 caaatacctttatttttcctttctcatgaagattaatattaagggaaagacagcaaaccc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 581 caaatacctttatttttcctttctcatgaagattaatattaagggaaagacagcaaaccc 522
Query: 182 tatattctactttattactatgatagctataaattaatttttaaaaagattagtctatgt 241
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 521 tatattctactttattactatgatagctatgaattaatttttaaaaagattagtctatgt 462
Query: 242 tgtaatttcaatagttattctaaagttatttcatacttttaaaattctatttgaataaaa 301
||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct: 461 tgtaatttcaatagttattctgaagttatttcatacttttaaaattctatttgaat-aaa 403
Query: 302 tatgagtatatagcgattttccatttatttggctacacatacattatgcctgatctttcc 361
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 402 tatgagtatatagtgattttccatttatttggctacacatacattatgcctgatctttcc 343
Query: 362 taaggtgttttaaataaaagtatttcaaaatagcacaggttcaaagtactgtatttacac 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 342 taaggtgttttaaataaaagtatttcaaaatagcacaggttcaaagtactgtatttacac 283
Query: 422 aggctatggctttacaagtcagtaaccccaaaactcaggaggctgaaaacacacacatat 481
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 282 aggctatggctttacaagccagtaaccccaaaactcaggagcctgaaaacacacacatat 223
Query: 482 tcatatacatatatacacataagcctacatacacac 517
||||||||||||||||||||||||||||||||||||
Sbjct: 222 tcatatacatatatacacataagcctacatacacac 187
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 916
Length adjustment: 10
Effective length of query: 507
Effective length of database: 906
Effective search space: 459342
Effective search space used: 459342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
