Query= MSMg01no087_g11.b1 MSMg01no087_g11.b1 CHROMAT_FILE:
MSMg01no087_g11.b1 PHD_FILE: MSMg01no087_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:31 2005
(235 letters)
>mm_chr2_113190165_113190798
Length = 634
Score = 377 bits (195), Expect = e-109
Identities = 225/237 (94%), Gaps = 5/237 (2%)
Strand = Plus / Minus
Query: 1 aaattagggactggcatcctaatctgacagagcaaataagcacacgtaatatagaactga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 aaattagggactggcatcctaatctgacagagcaaataagcacacgtaatatagaactga 375
Query: 61 gttttatgaccagtggctgctactttgattcccattgggaaactctgcttgcttgttctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 gttttatgaccagtggctgctactttgattcccattgggaaactctgcttgcttgttctc 315
Query: 121 ctccttttattgtgtgcagggaatcttgggaacaaaaatcctgtgtgtagaaaaaaatct 180
||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 314 ctccttttactgtgtgcagggaatcttgggaacaaaaatcctgcgtgtagaaaaaaatct 255
Query: 181 atattgtctgtgttttt--tttttagagacagactaaaatgcaacaaatatctaata 235
|||||||||||| | || | |||||||||||| |||| |||||||||||||||
Sbjct: 254 atattgtctgtg---gtagttctgagagacagactagaatgtaacaaatatctaata 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 634
Length adjustment: 9
Effective length of query: 226
Effective length of database: 625
Effective search space: 141250
Effective search space used: 141250
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no087_g11.g1 MSMg01no087_g11.g1 CHROMAT_FILE:
MSMg01no087_g11.g1 PHD_FILE: MSMg01no087_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:31 2005
(514 letters)
>mm_chr2_113028782_113029694
Length = 913
Score = 915 bits (473), Expect = 0.0
Identities = 502/515 (97%), Gaps = 9/515 (1%)
Strand = Plus / Plus
Query: 4 gaattctctaactccccattaccactagtattgataaagtgttaaatgacaacatcatta 63
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 204 gaattctctaactccccattaccactagtattgataaagtgttaaatg---acatcatta 260
Query: 64 atttggagacaggg---t-ctttaaaaatataaggttaaatgtagtccaaaaggtatata 119
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttggagacagggccttcctttaaaaatataaggttaaatgtagtccaaaaggtatata 320
Query: 120 attctgatccaatgagatgggattagaaaaaaagaaaaagagagagagaaacactaagag 179
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 attctgatccaatgagatgggattagaaaaaaagaaaa--agagagagaaacactaagag 378
Query: 180 gtcaagtgcataggaaaagggctgcatgaagtcacagtgataagatggtcaaacacaggg 239
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 gtcgagtgcataggaaaagggctgcatgaagtcacagtgataagatggtcaaacacaggg 438
Query: 240 atacatttcaaagtgttttcaaatcctctcctcagaccctggctgccactgtctaagaag 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 atacatttcaaagtgttttcaaatcctctcctcagaccctggctgccactgtctaagaag 498
Query: 300 aaactgtgatctagaccctggactttactcgaggtcttatacttggtcccctgtcactgc 359
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 499 aaactgtgatctagaccctggactttactcgaggtcttatacttggccccctgtcactgc 558
Query: 360 ctctgtgctttcaatgtcccatcaaaataaaggtagaaagtttccctctaaaatataaat 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ctctgtgctttcaatgtcccatcaaaataaaggtagaaagtttccctctaaaatataaat 618
Query: 420 gagacaaagtaatttcattgttctctgctgtgaggaatatttaaaaagcagcaaagttcc 479
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
Sbjct: 619 gagacaaagtaatttcattgttctctgttgtgaggaatatttaaaaagcagcaaagtttc 678
Query: 480 tgcactatgtccagctactctctgccccagcaggg 514
|||||||||||||||||||||||||||||||||||
Sbjct: 679 tgcactatgtccagctactctctgccccagcaggg 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 913
Length adjustment: 10
Effective length of query: 504
Effective length of database: 903
Effective search space: 455112
Effective search space used: 455112
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
