BAC Information

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BAC

Clone NameMSMg01-087G21
Chromosome2 (Build37)
Map Location 94,335,742 - 94,336,201
singlet/doubletsinglet
Overlap genenone
Upstream geneAlx4, Ext2, 2610203E10Rik, Gm1967, Gm1335, LOC620695, Alkbh3, Hsd17b12, E530001K10Rik, Ttc17, Itpa-ps1, Api5
Downstream geneLOC100043259
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087G21.T7 (MSMg01no087_g21.b1)MSMg01-087G21.TJ (MSMg01no087_g21.g1)
ACCAG306461AG306462
length686700
length of high quality
(start - end)
458 (58 - 515)344 (56 - 399)
definitionCHROMAT_FILE: MSMg01no087_g21.b1 PHD_FILE: MSMg01no087_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:33 2005CHROMAT_FILE: MSMg01no087_g21.g1 PHD_FILE: MSMg01no087_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:39:33 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCGCTATACGACTCCTATAGTCAGAGATCCGCGGAATTCCTTCAGAC
TCCCCCTGGACTCTCACGCCACACACACACCTTTGCAGAAACTGATTTGG
GTAGCGGGAATGGAGGAGAGGCTTACCGAGTGCTTCAATACAGATTAAGC
CCTGCAGACCACACCAGATGCAGAGTGCTTGCTCCCTGCTTGGTCCTCCA
AGGTGTCACCATACCCCAAAGGAAGCACACACGCATGCACACACACATAC
TCATTCACTTTTCCAATTCCATGCGTAGCTGTGAACATCCAGTGTCATTA
GCACCAGAGGAAAACGCCTTAGTCTTAAAGCAAGCAAACAATAGAACATT
AAGGCGTTCTCACCTGCCTGAAAGAACATCTTTCTTTCCAGAAAGGAAAA
GGAGTTGCGAGGAGAATGTGTCCTCTTCCCTTGAATGGATCCTTTCATGG
AGCTTACCCACCTAAGACTGCAAATGGAGGAAGTGACAAAACTCGATTAA
AACGGAATCTTCTGATTTCACTCACACCATTTGCAGTGGACCAAGGTGAA
TGGCTCTTATATCTGCCCTCTCTAATGAACACACGTTGTGAGCAAAAAGA
GAAAGGAGGCCCATTTTAATTTAACACTGAGACTAGGGTACAAATGACTC
GCCTACTCATTGTGGAAGAAATAAATCACAGTGTTC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTAGGTTAGGCTGTGCATGGTGGTTTTAACAAGAAGACTTGGGGCT
ACCGCTCATGGCACTGTTTTGAGAAGGGTTAGGAGGTGCAGCCTTGTTGG
AGGAGGCGGCTCATTGGGGGTTTAAAAGTCCACACTAGGCTCAGTCTCAC
TTTTTTTCTGACTAGTACTTGTGGATCAAATGTAAGTTCTCAGCTATTGC
TCCAGTAGAATGTACATATTTGTCTGTCTGCTGCCAAGTTCTTTGACACA
ATGTTTATGAACTAACCCTTTAAAACTGTAAGCCAGCCCCAATTATACCC
TCTCTTTTTATCAGTTGCTGTGGTCATGCTGTCTCTTCATAGCAAAACAC
ACGTAACTAAGACACTGGGTTATGGAATGAAACTGTGTCTTAAAACAAAT
GTACCAACAACTTGTACAGATCTAATTTGAGAGCTTGTAATTACAAATGC
TCTCTAGTGCCTAGCACTGATGATGCTGGGGAGTCAGCTGCCCTGTCACG
GATCTTGAACAGGGATGTATGTGTGGGGCGAAAGTTTCCTTTAACTGCTC
TGACCATGATAACCTGATGTCTCCTGACTTCGTCCTAGCCCATGGGTTTG
TGTTGCTATTGCTTCTGGCACATTTTCGTTTCTATTCCTTCAGCGTTACC

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_g21.b1 MSMg01no087_g21.b1 CHROMAT_FILE:
MSMg01no087_g21.b1 PHD_FILE: MSMg01no087_g21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:39:33 2005
         (458 letters)



>mm_chr2_94335542_94336401
          Length = 860

 Score =  814 bits (421), Expect = 0.0
 Identities = 451/461 (97%), Gaps = 4/461 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggactctcacgccacacacacacctttgcagaa-actgatttgggtagcgggaatggagg 59
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 660 ggactctcacgccacacacacacctttgcagaacactgatttgggtagcgggaatggagg 601

                                                                       
Query: 60  agaggcttaccgagtgcttcaata-cagattaagccctgcagaccacaccagatgcagag 118
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 600 agaggcttaccgagtgcttcaataccagattaagccctgcagaccacaccagatgcagag 541

                                                                       
Query: 119 tgcttgctccctgcttggtcctccaaggtgtcaccataccccaaaggaagcacacacgca 178
           ||||||||||||||||| ||||||||||| ||||||| ||||||||||||||||||||||
Sbjct: 540 tgcttgctccctgcttgatcctccaaggtctcaccatgccccaaaggaagcacacacgca 481

                                                                       
Query: 179 tgcacacacacatactcattcacttttccaattccatgcgtagctgtgaacatccagtgt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 480 tgcacacacacatactcattcacttttccaattccatgcgtagctgtgaacatccagtgt 421

                                                                       
Query: 239 cattagcaccagaggaaaacgccttagtcttaaagcaagcaaacaatagaacattaaggc 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 420 cattagcaccagaggaaaacgccttagtcttaaagcaagcaaacaatagaacattaaggc 361

                                                                       
Query: 299 gttctcacctgcctgaaagaacatctttctttccagaaaggaaaaggagttgcgaggaga 358
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 360 gttctcacctgcctgaaagaacatctttctttccagaaaggaaaaggagttgtgaggaga 301

                                                                       
Query: 359 atgtgtcctcttcccttgaatggatcctttcatggagcttacccacctaagactgcaaat 418
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 atgtgtcctcttcccttgaatggatcctttcatggagcttacccacctaagactgcaaat 241

                                                    
Query: 419 ggaggaagtgacaaaact-cgattaaaacggaatcttctga 458
           |||||||||||||||| | ||||||||| || |||||||||
Sbjct: 240 ggaggaagtgacaaaa-tgcgattaaaatgggatcttctga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 458
Length of database: 860
Length adjustment: 10
Effective length of query: 448
Effective length of database: 850
Effective search space:   380800
Effective search space used:   380800
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)