BAC Information

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BAC

Clone NameMSMg01-087M15
Chromosome2 (Build37)
Map Location 128,153,739 - 128,154,166
singlet/doubletsinglet
Overlap geneLOC100043424
Upstream geneDusp2, Astl, Adra2b, A530057A03Rik, Fahd2a, Kcnip3, Prom2, Zfp661, Mrps5, Mal, LOC668892, Mall, Nphp1, 1500011K16Rik, Bub1, Acoxl, Bcl2l11
Downstream geneLOC100043729, LOC383791, LOC100043730, Gm355, Anapc1, Mertk, Tmem87b, 1600015H20Rik, Zc3h8, LOC100043735, LOC100043736, Zc3h6, LOC668894, Ttl, LOC100043738, Rpo1-2, Chchd5, LOC545461, LOC100043431, Slc20a1, A730036I17Rik, LOC671466, Ckap2l, Il1a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087M15.T7 (MSMg01no087_m15.b1)MSMg01-087M15.TJ (MSMg01no087_m15.g1)
ACCAG306715AG306716
length698762
length of high quality
(start - end)
---428 (139 - 566)
definitionCHROMAT_FILE: MSMg01no087_m15.b1 PHD_FILE: MSMg01no087_m15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:02 2005CHROMAT_FILE: MSMg01no087_m15.g1 PHD_FILE: MSMg01no087_m15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCTAGCGCCTTCCCACCTCCTGCTCTTGCGAATGTCCATCTTTCACACGA
AATCCTCTCAAAACTGCGTGCGGTGATGCTACCTTGTGACAGCCGTCTGC
ATATCTCTATCGATGAGTGATACTGCTGCTTGTACAGCTGCCGAGATAGC
TCTCCAGATGACCACCACCTTCTCAGTTACGCTATTTTCTTCTCATTGAG
CTTTTACACATTATTAACAATGCTCTGCGATATAACTCTATTGTAACATA
TATGCGCATTAGGCACGTACATTTCTGAGTCTAACAGTGCTCTTCCAGAA
GACCTGTGTTTGATTCCCACCACCCACCTGTCCACTCACAATTGTAACTC
CAGTTCCAGAGGACCTAATACTCTACTCTGGTCTACTCACTCACACGCGC
ACATACACACATACACACACACACACAATAACACACACACATACCATTCT
TGCAAGTGTCTGTCTTTTTCACTGGAACCATCTCAAAAGCATGTGTGATG
GCCTAACTCCTTATTCATATGCCCCACTACCCATATGACTAAAATAAAAG
TTAAATTCCTAAATGATGTAAAATTATTTGGGTGACATTTTTCCTCCTCC
CAGCATATATAGCTTGCCCTCCCCTTGCCTTTCAAATTCTTTTCACAG
TTTTNNNNNNNNNCCCCCCCCCTCCCCCNCCCCCCCCTTTNCNNNCATAT
TCCCNCNCCCCTCCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACTCCCCCTCAG
TCTTATGGGTGCATTATGGCATCTTGCTGTGACTACATATTGTCACTATA
TAGTCAGTCTTTATCTTCACTCACATCTGCTCTAAGTATTTCTCTTTAAT
TTTTTTTTAATCACATTCAGGGTATGTATGTGTGTGTGTATGTGTGCACA
TTCATTTTGCTTATGGCACTTTCAGACCTTAGATTTTCATTTTCTCCTTC
CTATTTTTGACTTTTGTTTCATGAGTACAAGAGTACCACCACTGCACTTT
GAAACATTCTTATGATAGATGCCTTAAAATGAAAATGTTTGTCAGATGGG
CTGGGAGTGGCAGTGCATACCTTTAATCCAAGCACTCGGTAGGCAGAGGT
AGGCAGATCTCCAAGATGGAGGCCAGACTCGTTTACAGAGTGAGTTTAAA
GACAGCCAGGTCTACACAGAGAAACCACATCCAAAAAAAAAAAAAATTTG
TCAGATAACATTGCATCTCCGTATTGGAATTTACTGATCTTTTTTCATTT
GGTTTAAAAGATTTCTGGACTTTATCAAGAGTATTTTCTATTGAAATCTT
GTTATCTGGAGGAATGTATTTAATTATTGCCCTCTATTTTTACTGGGCTT
CTTACAAAGCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_m15.g1 MSMg01no087_m15.g1 CHROMAT_FILE:
MSMg01no087_m15.g1 PHD_FILE: MSMg01no087_m15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:02 2005
         (428 letters)



>mm_chr2_128153654_128154483
          Length = 830

 Score =  785 bits (406), Expect = 0.0
 Identities = 422/428 (98%), Gaps = 2/428 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   actccccctcagtcttatgggtgcattatggcatcttgctgtgactacatattgtcacta 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 513 actccccctcagtcttatgggtgcactatggcatcttgctgtgactacatattgtcacta 454

                                                                       
Query: 61  tatagtcagtctttatcttcactcacatctgctctaagtatttctctttaa--ttttttt 118
           |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||
Sbjct: 453 tatagtcagtctttatcttcactcacatctgctctaagtatttctctttaattttttttt 394

                                                                       
Query: 119 ttaatcacattcagggtatgtatgtgtgtgtgtatgtgtgcacattcattttgcttatgg 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ttaatcacattcagggtatgtatgtgtgtgtgtatgtgtgcacattcattttgcttatgg 334

                                                                       
Query: 179 cactttcagaccttagattttcattttctccttcctatttttgacttttgtttcatgagt 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 cactttcagaccttagattttcattttctccttcctatttttgacttttgtttcatgagt 274

                                                                       
Query: 239 acaagagtaccaccactgcactttgaaacattcttatgatagatgccttaaaatgaaaat 298
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 acaagagtaccaccactgcactttgaaacattcttatgatagatgccttaaaatgaaaat 214

                                                                       
Query: 299 gtttgtcagatgggctgggagtggcagtgcatacctttaatccaagcactcggtaggcag 358
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 213 gtttgtcagatgggctgggagtggtagtgcatacctttaatccaagcactcggtaggcag 154

                                                                       
Query: 359 aggtaggcagatctccaagatggaggccagactcgtttacagagtgagtttaaagacagc 418
           |||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 153 aggtaggcagatttccaagatggaggccagcctcgtttacagagtgagtttaaagacagc 94

                   
Query: 419 caggtcta 426
           ||||||||
Sbjct: 93  caggtcta 86


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 428
Length of database: 830
Length adjustment: 9
Effective length of query: 419
Effective length of database: 821
Effective search space:   343999
Effective search space used:   343999
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)