BAC Information

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BAC

Clone NameMSMg01-087N18
Chromosome2 (Build37)
Map Location 72,482,812 - 72,483,040
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1631, Itga6, Pdk1, Rapgef4, LOC100040270, B230120H23Rik, Cdca7, LOC383712, LOC635960
Downstream geneLOC100039928, 6430710C18Rik, Sp3, Hspe1-ps5, Gtpbp9, LOC620110, Sp9, 1700023B02Rik, Scrn3, Gpr155, Wipf1, Chrna1, Chn1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-087N18.T7 (MSMg01no087_n18.b1)MSMg01-087N18.TJ (MSMg01no087_n18.g1)
ACCAG306767AG306768
length729734
length of high quality
(start - end)
475 (33 - 507)239 (130 - 368)
definitionCHROMAT_FILE: MSMg01no087_n18.b1 PHD_FILE: MSMg01no087_n18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:08 2005CHROMAT_FILE: MSMg01no087_n18.g1 PHD_FILE: MSMg01no087_n18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:08 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCGGCCGCTATACGACTCCTATAGGTCGAGGATCCGCGGAATTCTAGGCC
AGCCTGGCCTACAGAGTGAGTTCCAGGGCATCCAGTGCTACACAGAGAAA
CCCTGTCTCAAAAACAAAACAAAAACAAAAACAAAGCAAACAAAAACAAA
AGGCCTTTCTTCTTTTTTTTTTTCCATTTTTTATTAGGTATTTAGCTCAT
TTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACTCACCCCCAC
TCCCCTACCCACCCACTCCCCCTTTTTGGCCCTGGCGTTCCCCTGTACTG
GGGCATACAAAGTTTGCGTTTCCAATGGGCCTCTCTTTCCAGTGATGGCC
GACTAGGCCATCTTTTGATACATATGCAGCTAGAGTCAAGAGCTCCGGGG
TACTGGCCAGCTCATAATGTTGTTCCACCTATAGGGTTGCAGATCCCTTT
AGCTCCTTGGGTTCTTTCTCTAGCTCCTCCATTGGGAGCCCTGTGATCCA
TCCATTAGCTGGCTGTGAGCATCCACTTCTGTGTTTGCTAGGCCCCGGCA
TAGTCTCACAAGAGATAGCTACTTCTGGGTCCCTTTCGATAAAACCTGCT
AGTGTATGCAACGGTGTCCGCCGTTGGATGCTGATTATGGGGTGGACCCC
TGGATATGTCAGTCTCTTAATGGTCCATCCCTTCCTTTCAGCTCCAACTT
TGGCCTTGGCATCTCCTTCCATGGTCGTT
CAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTTCCAAAGCTATTCTGCCCACCCTGG
CACCAATGGCAAAGGGCACATAAGACCAGAGAGGGTTAACCAAGAATCAA
CAGTGAACCATATCAATGACACCAATATTGTATAATGTATAGAACTTAAA
ATAAGTACTGACTGTGTGCTCAGAGCCAGGCTCGGTGCTGGCACTAACTT
CGGATGAGTCTTATTTCATCCAGCTGCCATAATTGCCACTTCTCAGATGA
AAAAAAAAATAATAAGAAGAAATTCGAAGCTCCAGGGAGCTGGAGCGACT
CCCCAAGGATCCGTATTATGTTTGTGCCTGCGAGATGATTTTCAGCCCAC
TGAAGACGCTGTGGCAGGACGCCAAGGGTGTACCTGCAGGAGGCAGCCTT
TGGTACAAGGTGGTTGTGTGCCCTTCTAGAACAGCAGTGGTTCTGGAATA
ATGGTTCTAGATATTAGTGGCTTGGCTTGGTAAGAGTGCAGGTTTCCCCT
TTCCCTCCCTTCTCCCTCCTTTTCTTTCTCCCATTCTTTTTCCTTTTTCC
TTTTTTTCATATTCCTTCAACTTTACCATCTTTTTTTTATCCCTTTCTTT
ATTCTTTTCCCCTTCACTTTTTTCTCTCCCTTTCTTTTTCCCCTTTTTCC
CTCCCTTTTCCTACCTTTCTTTCCTTCCCTTTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no087_n18.g1 MSMg01no087_n18.g1 CHROMAT_FILE:
MSMg01no087_n18.g1 PHD_FILE: MSMg01no087_n18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:08 2005
         (239 letters)



>mm_chr2_72482612_72483247
          Length = 636

 Score =  371 bits (192), Expect = e-107
 Identities = 221/232 (95%), Gaps = 3/232 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagggttaaccaagaatcaacagtgaaccatatcaatgacaccaatattgtataatgta 60
           |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct: 201 agagggttaaccaagaatcaacagtggaccatatcaatgacaccaatattgtataaggta 260

                                                                       
Query: 61  tagaacttaaaataagtactgactgtgtgctcagagccaggctcggtgctggcactaact 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cagaacttaaaataagtactgactgtgtgctcagagccaggctcggtgctggcactaact 320

                                                                       
Query: 121 tcggatgagtcttatttcatccagctgccataattgccacttctcagatgaaaaaaaaaa 180
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||
Sbjct: 321 tcggatgagtcttatttcatccagctgccataagtgccacttctcaaatgaaaaaaataa 380

                                                               
Query: 181 taataagaagaaattcgaagctccagggagctggagcgactccccaaggatc 232
           || |||||||   ||||||||||||||||||||||||||||||||| |||||
Sbjct: 381 tagtaagaag---ttcgaagctccagggagctggagcgactccccagggatc 429


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 636
Length adjustment: 9
Effective length of query: 230
Effective length of database: 627
Effective search space:   144210
Effective search space used:   144210
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)