BAC Information

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BAC

Clone NameMSMg01-088C11
Chromosome2 (Build37)
Map Location 7,267,701 - 7,268,009
singlet/doubletsinglet
Overlap genenone
Upstream geneUsp6nl, LOC100040387, Cugbp2, LOC100040659
Downstream geneLOC100040648, LOC672230
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088C11.T7 (MSMg01no088_c11.b1)MSMg01-088C11.TJ (MSMg01no088_c11.g1)
ACCAG306986AG306987
length692745
length of high quality
(start - end)
324 (43 - 366)369 (191 - 559)
definitionCHROMAT_FILE: MSMg01no088_c11.b1 PHD_FILE: MSMg01no088_c11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:31 2005CHROMAT_FILE: MSMg01no088_c11.g1 PHD_FILE: MSMg01no088_c11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGG
AATTCAACATGGACAGAAATCTAAAGGCAGAAGCTGACACAGAGGTTGTG
GAGGAGTGGTGCTTTCTGCCCTGCTCCCCCGTGGCTTGCTCAGCCTGCTT
CTTATAGAGCCCAAGACCACCAACCCAGGGTGACCCCACCCACAATGGAC
TGGGCCCTCCTACTTCAATCACTAATTAAGAAAATGCCGTACAGATCTTA
TAGATGCATTTTTATCAATTGAGGCTCCTTCTTTTTAGATAACTTTAGAT
TATGTCAAGTTGATGTATAACTAGCCAGTACAGACAGTGACCTCCTCCTA
AGGGGTTTTATTATGAAACTTGGAAGCATATGAAAATATTAAAGTGCAGT
GAATGAAGGAACACACAGTGAGACCTGATATAGCATAGGGTTATATGAAT
TAAACTTAAGAAGTATTTCTTTATTTGCATGCCTGTGGGTATAAGTGCTT
ATGTGTGTGCGCGTGTGTGCAATGTATTTGCGTGTTTTTGCCTAAGAACA
ATCCCTTCTAATATGTTAATGTGACAAGCCTGTATGACAATGCGATGAGC
ATTGGTTCCATTTATTTTCTTCAATAACTTATTTGGTTTTTTACATTCCT
ACCTGTGTTTTTGTATTTATATTCAATCCCCACATACCACAG
CCCCNNNNNNNNNNNNNNNCCCTTTTNNNNNCCCCCCCCNCNNNNNCNNG
ATTGTTTTTCCCCTATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAACCCTAGT
ATGCACATAAAGACCAGATAAGCAGTGTGATTATTCCTCATCACAGTGCC
CTACAGCCAGCAGGGAGGTGATAGACAGAGAATGCTCAGAAGCTTATAGG
CTGGCCAGCCTGGTGGCATAAGACAGACATAAGACCGTATCTAGAAAAAG
GTAGACACAAAGGATTGACATCCAAGGTTGTCTCTGACCTCCATATATTC
ACCATGGAATGCTTGTACTTACACTTACACAAACACACTCAGATACACAC
CACATATATCATAAAATAATCAGATAGATAGATAGATAGATAGATAGATA
GATAGATAGATAGAGCTGTCCAGAGTTCTTACACACAGGAGAAGCAGCTT
ATCTATAACAGTAGCAATCCAGTAGATAGATAGATGATAGATAGATAGAT
AGATAGATAGATAGATAGATAGATAGATAGATAGATAGATAGATGTCTTT
TTTTTTTCTTTATTCCTTACTTTATTTCTTGTTCGCCTATACCAACTACA
ATTCCTCCCAAATACTTTTTCTAATACGTTCAATCCTAATTTATTTCAAA
TCTATATTATGTTATCACTAACTTCGACTTTATATTACTTATCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_c11.g1 MSMg01no088_c11.g1 CHROMAT_FILE:
MSMg01no088_c11.g1 PHD_FILE: MSMg01no088_c11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:32 2005
         (369 letters)



>mm_chr2_7267701_7268469
          Length = 769

 Score =  555 bits (287), Expect = e-162
 Identities = 302/309 (97%), Gaps = 4/309 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcacagtgccctacagccagcagggaggtgatagacagagaatgctcagaagcttatagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 tcacagtgccctacagccagcagggaggtgatagacagagaatgctcagaagcttatagg 250

                                                                       
Query: 61  ctggccagcctggtggcataagacagacataagaccgtatctagaaaaaggtagacacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ctggccagcctggtggcataagacagacataagaccgtatctagaaaaaggtagacacaa 190

                                                                       
Query: 121 aggattgacatccaaggttgtctctgacctccatatattcaccatggaatgcttgtactt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 aggattgacatccaaggttgtctctgacctccatatattcaccatggaatgcttgtactt 130

                                                                       
Query: 181 acacttacacaaacacactcagatacacaccacatatatcataaaataatc----agata 236
           |||||||||||||||||| ||||||||||||||||||||||||||||||||    |||||
Sbjct: 129 acacttacacaaacacacacagatacacaccacatatatcataaaataatcagatagata 70

                                                                       
Query: 237 gatagatagatagatagatagatagatagatagatagagctgtccagagttcttacacac 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct: 69  gatagatagatagatagatagatagatagatagatagagctgtccagagttcttatagac 10

                    
Query: 297 aggagaagc 305
           |||||||||
Sbjct: 9   aggagaagc 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 42
Number of extensions: 8
Number of successful extensions: 8
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5
Number of HSP's successfully gapped: 1
Length of query: 369
Length of database: 769
Length adjustment: 9
Effective length of query: 360
Effective length of database: 760
Effective search space:   273600
Effective search space used:   273600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)