BAC Information

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BAC

Clone NameMSMg01-088D14
Chromosome2 (Build37)
Map Location 67,267,251 - 67,267,876
singlet/doubletsinglet
Overlap genenone
Upstream geneScn1a, LOC383706, Scn9a, Scn7a, LOC383707, LOC100039540, Gm1322
Downstream geneCmya3, LOC621171, LOC227995, B3galt1, Stk39
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-088D14.T7 (MSMg01no088_d14.b1)MSMg01-088D14.TJ (MSMg01no088_d14.g1)
ACCAG307039AG307040
length713746
length of high quality
(start - end)		629 (40 - 668)376 (77 - 452)
definitionCHROMAT_FILE: MSMg01no088_d14.b1 PHD_FILE: MSMg01no088_d14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:37 2005CHROMAT_FILE: MSMg01no088_d14.g1 PHD_FILE: MSMg01no088_d14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:40:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCC
TTATAAATGCTCTATGAAGCACATCATTTTCAGCAGTTTTTTTGCTATTA
TTTATTGCAGTGCTGAGATTTGAGTTCTTATATTAAAACCATGTGAAGTT
TAAAACCATATGAAATGAGTTTGTGTATACTCAAATAAAAATTATGTTGT
TCATTTTAAGTTCTAATTACTAATCTCAGGGATATTATGGCACCTTAGTT
TCATTCCTACAGAGAGTTGCTGTTTTCATCCGTTTGATGAATTTATTACA
AATTCAGGAATGGACAGGTGGTGTGAGATCTATCCAAGACCTCAATTCTG
AGTGGGATTTGACTGGAAGCCACTAGTCCTTGCTTTAAGAGTTACTTAGA
AAAGTTTTTGTTCTGAGTATTTCAGCCAAATGTTAGACACAACCATATGT
TTAGGCTATCTCAGGTTCACTTACTGCTTACTGGAGTTTTCAGCTTTATA
ACTTGTTTCTGATCCAGCTCCTCATTCTACATAAGCTCAGAGCATCCTAA
ATCAATTTCACGCATTCATCTCTGAAATCAAAACTCTGGCTATTGAGATA
AACAGAGAAGGGGCTGGTGAGATGGCTCAGCGGGTAAGAGTACCCGACTG
CTCTTCCAAAGGTCCTGAGTTCATATCCCAGCAACCACATGGTGGCTCAC
AACCATCTGTAAT

CGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTGTGCTAAAACTACCTGGACCCTA
GGTGTTGTTGATGATGTTGCTGCTGTTGTTTTTGTTGGGAGACATTTATC
GACTATACTGGAATGACCTATGCCCTCTGCACATATGTTACAGTTGTGTA
GCTTGATTCTTTTGGCGACTTATAACAGTGGGAGCAGGAGCTGTCTGTGA
CTCTGTTACCTGCCTTTGGGACCCTTTCCTCCCACTGGTTTGCTTTGTTT
ACCCTTAATAGAATCAGGGGTGCCTATTCTTATTCAAGCTTGATATGCCA
TGGCTAGTGGATATCCATCCTGGCAAGACTTTTTCTAAAGAGAAATAGAG
GAGGAAGGGAGGAGAGAGAAGAGAGAAGAGAGAGAGATGAGAAAGAGAGA
GAAAGAGAGAGAGTATCACTTTTCTTCTCCTCCTCCTTTTTTTTTTTTTC
CTTTTCCTTTCTTTCGAACTATTCTCTTCTTTTCTTTTCTTTTCCCCTCC
CCCCCCCCCTTCCTATTTTTTCCTTATCTTCCCCCGATCTTCTTTTTTGC
TTCCCCTTCTTTTTCTTTCTATATTTCCCCCCCCTTTTTTTTCATTTTCT
CCTGCCTCTTTATTTTATCTTTGTTTCACCTTTCCCCCCCCCCTTATCTT
TCTTATTTCCTCTCCTCCCCTTTTATTCCCCTTTCTCCCTTTTATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no088_d14.b1 MSMg01no088_d14.b1 CHROMAT_FILE:
MSMg01no088_d14.b1 PHD_FILE: MSMg01no088_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:40:37 2005
         (629 letters)



>mm_chr2_67267106_67268135
          Length = 1030

 Score = 1180 bits (610), Expect = 0.0
 Identities = 622/626 (99%), Gaps = 1/626 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccttataaatgctctatgaagcacatcattttcagcag-tttttttgctattatt 63
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 771 gaattccttataaatgctctatgaagcacatcattttcagcagttttttttgctattatt 712

                                                                       
Query: 64  tattgcagtgctgagatttgagttcttatattaaaaccatgtgaagtttaaaaccatatg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 tattgcagtgctgagatttgagttcttatattaaaaccatgtgaagtttaaaaccatatg 652

                                                                       
Query: 124 aaatgagtttgtgtatactcaaataaaaattatgttgttcattttaagttctaattacta 183
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 651 aaatgagtttgtgtatactcaaatagaaattatgttgttcattttaagttctaattacta 592

                                                                       
Query: 184 atctcagggatattatggcaccttagtttcattcctacagagagttgctgttttcatccg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 atctcagggatattatggcaccttagtttcattcctacagagagttgctgttttcatccg 532

                                                                       
Query: 244 tttgatgaatttattacaaattcaggaatggacaggtggtgtgagatctatccaagacct 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 tttgatgaatttattacaaattcaggaatggacaggtggtgtgagatctatccaagacct 472

                                                                       
Query: 304 caattctgagtgggatttgactggaagccactagtccttgctttaagagttacttagaaa 363
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 471 caattctgagtgggatttgactggaagccactagcccttgctttaagagttacttagaaa 412

                                                                       
Query: 364 agtttttgttctgagtatttcagccaaatgttagacacaaccatatgtttaggctatctc 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 411 agtttttgttctgagtatttcagccaaatgttagacacaaccatatgtttaggctatctc 352

                                                                       
Query: 424 aggttcacttactgcttactggagttttcagctttataacttgtttctgatccagctcct 483
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 351 aggttcacttacagcttactggagttttcagctttataacttgtttctgatccagctcct 292

                                                                       
Query: 484 cattctacataagctcagagcatcctaaatcaatttcacgcattcatctctgaaatcaaa 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 cattctacataagctcagagcatcctaaatcaatttcacgcattcatctctgaaatcaaa 232

                                                                       
Query: 544 actctggctattgagataaacagagaaggggctggtgagatggctcagcgggtaagagta 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 231 actctggctattgagataaacagagaaggggctggtgagatggctcagcgggtaagagta 172

                                     
Query: 604 cccgactgctcttccaaaggtcctga 629
           ||||||||||||||||||||||||||
Sbjct: 171 cccgactgctcttccaaaggtcctga 146


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 629
Length of database: 1030
Length adjustment: 10
Effective length of query: 619
Effective length of database: 1020
Effective search space:   631380
Effective search space used:   631380
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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