BAC Information

Click to search

BAC

Clone NameMSMg01-089A12
Chromosome2 (Build37)
Map Location 121,819,389 - 121,819,604
singlet/doubletsinglet
Overlap geneCtdspl2
Upstream geneTmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b, Wdr76p, Mfap1a, Wdr76, Frmd5, Casc4, Mageb3
Downstream geneEif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm, Spata5l1, AA467197, Slc30a4, Pldn, Sqrdl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089A12.T7 (MSMg01no089_a12.b1)MSMg01-089A12.TJ (MSMg01no089_a12.g1)
ACCAG307634AG307635
length657763
length of high quality
(start - end)
291 (27 - 317)215 (138 - 352)
definitionCHROMAT_FILE: MSMg01no089_a12.b1 PHD_FILE: MSMg01no089_a12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:42 2005CHROMAT_FILE: MSMg01no089_a12.g1 PHD_FILE: MSMg01no089_a12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:41:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AAGATCCGCGGAATTCCAGAATTCCTCTTGCCTCTGCCTCTCAATGCAGG
GATTAAAGACATATGCCTCCAGTCATCAGCTTTTTTTGCATTTTTAAGGC
ATTATGAAAGACATTTTTGTTTCATGCTATCATATGTCTATATAATGGGC
TGGTAATGTAGCTCAGAGGTCAAGTGCTTGCCTAGCAGGCAGATGGGCCT
AAATTATTCCACCACCACCACCATAAACAAGTATCTAAATACTTAGTGTC
TCTCTTTAAGGGGCTGTTTAAATATAGCATATCTTTCTATGCATTAACCA
AAAGTTAATCTAGATAGTGCTTAAATTTACCTGACATACATGTTACCTAT
AAGAAGTAAATGAAAAAGTCAGAATAATATGTATAGTATTTTTAGTATTC
ATAAAAAAATTTATGGTGTAGGCTTACATTTTTCAAAACCTACTTTAATA
AGGGTTCTTATATGCGTTAACCTCATTTCTACCCCATCACCCATCAGTGG
TAGTAGAACGTACAGGCTAATAGGGTAAAGGGGTATGTGTTCTGTTTACA
TATAGCTCTTTTGGGTGATTCCAATCTTCCATTGACATGATACCATCCGT
TCAGCTCATGTGACTTTTTTTCCCAGTTCCTTCCACTTTCCATCATTATT
CCCAAAA
TTTTTTTTTTTTTTTTTTTTTTCNTTCTGTTTTTTTCCTTTTCCTTCTTT
TCNNNNNNNNNCTCTATGATAGTGCGXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCTTATTATATAA
ATTAGATATATTGAACTGTAATTTTACAGATAACATTACTGTACTAAGTA
AAAATGACCAACAAGGAATGAATATTTCATTATTATTATTAATTGGATTT
ATGGGGAAAAATAAAGACAAAATCCCAGCCTTAACGTGGCAAGTTGTTCT
TGGGGATCTGTATCAGCGTTCCTTGCCTCCACCTGCTGGCAAAGATTATG
AAACTAGTAGAGATCACAAATCACAAAAGTTATTGTTTTTTAATTATAAA
TTAATGTTTCACATTAATTATTTTTCATCACCCCCCACCACTTTGTGTTA
ATAAACCATTAAAATACTGATAAAACTACTACTAAATCTACAGAACGACT
CTCTGAACATCACCTAATAAATTTTCTTCACTCACAATGTTACCCAATGG
TTTAAAAATTAGGCTCAACATTACCTGCATATCGACCTCTTGGAAAACGA
CTGGAACATCAGAGTGTTGCTTCTTCTAGTTCACTCCGACTGCACTGTAC
TATCTTTTCCTTCTTATTTTTTTATACTCTCTCCCTTTACCACAAATTTT
CCTCCCAGTTTGATGAAGTACCCATTACTTCTTTTTACAACCCACGTTGT
ATGTGACCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_a12.g1 MSMg01no089_a12.g1 CHROMAT_FILE:
MSMg01no089_a12.g1 PHD_FILE: MSMg01no089_a12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:42 2005
         (215 letters)



>mm_chr2_121819189_121819804
          Length = 616

 Score =  387 bits (200), Expect = e-112
 Identities = 212/216 (98%), Gaps = 1/216 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttatt-atataaattagatatattgaactgtaattttacagataacattactgtacta 59
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 416 tcttattaatataaattagatatattgaactgtaattttacagataacattactgtagta 357

                                                                       
Query: 60  agtaaaaatgaccaacaaggaatgaatatttcattattattattaattggatttatgggg 119
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 agtaaaaatgaccaacaaggaatgaatatttcattattattattaattggatttatgggg 297

                                                                       
Query: 120 aaaaataaagacaaaatcccagccttaacgtggcaagttgttcttggggatctgtatcag 179
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 296 aaaaataaagacaaaatcccagtcttaacgtggcaagttgttcttggggatctgtatcag 237

                                               
Query: 180 cgttccttgcctccacctgctggcaaagattatgaa 215
            |||||||||||||||||||||||||||||||||||
Sbjct: 236 tgttccttgcctccacctgctggcaaagattatgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 215
Length of database: 616
Length adjustment: 9
Effective length of query: 206
Effective length of database: 607
Effective search space:   125042
Effective search space used:   125042
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)