Query= MSMg01no089_b19.b1 MSMg01no089_b19.b1 CHROMAT_FILE:
MSMg01no089_b19.b1 PHD_FILE: MSMg01no089_b19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:48 2005
(309 letters)
>mm_chr2_78906203_78906909
Length = 707
Score = 561 bits (290), Expect = e-164
Identities = 303/308 (98%), Gaps = 2/308 (0%)
Strand = Plus / Minus
Query: 2 gaattctactccagtacttagatgtcaagtcttctgggaatgtgcagcgataccctcagt 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 507 gaattctactccagtacttagatgtcaagtcttctgggaatgtgcagcgatacccccagt 448
Query: 62 tatgctaagattattcactgcttcccccaattatcatctctatcatacagtcttataatt 121
|||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||
Sbjct: 447 tatgctaagattattcactgtttcccccaattatcatctctatcatacagtc--ataatt 390
Query: 122 atctatttacttttcaaaattccattagactattaacttcttggggcaagccctgtgtgc 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 atctatttacttttcaaaattccattagactattaacttcttggggcaagccctgtgtgc 330
Query: 182 tatccatcactttattgcttcttactagattactaaataaatacttattgaattagtgta 241
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 tatccatcacattattgcttcttactagattactaaataaatacttattgaattagtgta 270
Query: 242 tattaatgttagccacttgcatgacaacaatatattccttttgggcaccagcaaaaatac 301
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 tattaatgttagccacttgcatgacaacaatatattccttttgggcaccagcaaaaatac 210
Query: 302 taagtagg 309
||||||||
Sbjct: 209 taagtagg 202
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 309
Length of database: 707
Length adjustment: 9
Effective length of query: 300
Effective length of database: 698
Effective search space: 209400
Effective search space used: 209400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no089_b19.g1 MSMg01no089_b19.g1 CHROMAT_FILE:
MSMg01no089_b19.g1 PHD_FILE: MSMg01no089_b19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:41:48 2005
(584 letters)
>mm_chr2_78807711_78808694
Length = 984
Score = 1067 bits (552), Expect = 0.0
Identities = 576/584 (98%)
Strand = Plus / Plus
Query: 1 ttgcagtggaatactattcagtcattagaataggtaaaattttatcagcaccacaataca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttgcagtggaatactattcagtcattagaataggtaaaattttatcagcaccacaataca 260
Query: 61 gatgggggcagagatagaaatagtgaagtaagccaggtacagagagatgggttccaccca 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gatgggagcagagatagaaatagtgaagtaagccaggtacagagagatgggttccaccca 320
Query: 121 atctcagcaatatgcgaaatttactaaagccagtctcagaaaccgagagtagagtggtgt 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 321 atctcagcaatatgtgaaatttactaaagccagtctcagaaaccgagagtagaatggtgt 380
Query: 181 tggcagaggctagcaatagcagtatggaggcagatgaggggattgaccagcatcatactt 240
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 381 tggcagaggctagcaatagcagtatggaggcagatgaggggattgatcagcatcatactt 440
Query: 241 ggactgaagttaagtagggactagtagggtgactccagatttaaaacgagggctagtaga 300
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 ggactgaagttaagtagggactagtagggtgactccagatttaaaatgagggctagtaga 500
Query: 301 gagactcaagattaaaagtgacctgaagactttgaaagtcaacattataaagcaatgatc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gagactcaagattaaaagtgacctgaagactttgaaagtcaacattataaagcaatgatc 560
Query: 361 aataacttaagaggaatagttaaccacattcaaacattgtataatatatacatagtttaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aataacttaagaggaatagttaaccacattcaaacattgtataatatatacatagtttaa 620
Query: 421 aatattacactggccctttaatacataactttgcataactacgtattatagaatttcatg 480
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
Sbjct: 621 aatattacactggccctttaatacataactttgcataactatgtattatagaatttcacg 680
Query: 481 atataattttaatgttcataggtatctgttgaaaattaatgtaaattaagatgtgaaata 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atataattttaatgttcataggtatctgttgaaaattaatgtaaattaagatgtgaaata 740
Query: 541 ataattctggggctggagatatagttcagttggtagagtgcctc 584
|||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 741 ataattctggggctggagatatagttcagttgctagagtgcctc 784
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 984
Length adjustment: 10
Effective length of query: 574
Effective length of database: 974
Effective search space: 559076
Effective search space used: 559076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
