BAC Information

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BAC

Clone NameMSMg01-089K05
Chromosome2 (Build37)
Map Location 126,260,145 - 126,260,469
singlet/doubletsinglet
Overlap genenone
Upstream geneFbn1, Cep152, Shc4, Eid1, 3110001I20Rik, Cops2, Galk2, Fgf7, Dtwd1, Atp8b4
Downstream geneSlc27a2, Hdc, Gabpb1, Usp8, LOC100043714, Usp50, Trpm7, 2010106G01Rik, Ap4e1, Blvra, Ncaph, 1700041B20Rik, 1810024B03Rik, LOC100043408, Ascc3l1, Ciao1, Tmem127, ENSMUSG00000074822, Stard7, Dusp2, Astl, Adra2b, A530057A03Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-089K05.T7 (MSMg01no089_k05.b1)MSMg01-089K05.TJ (MSMg01no089_k05.g1)
ACCAG308085AG308086
length827676
length of high quality
(start - end)
69 (161 - 229)325 (48 - 372)
definitionCHROMAT_FILE: MSMg01no089_k05.b1 PHD_FILE: MSMg01no089_k05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:30 2005CHROMAT_FILE: MSMg01no089_k05.g1 PHD_FILE: MSMg01no089_k05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:42:30 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTCTTTTTTTTTCCCCCCCCCCTTTTTTCCCCTTCTCTCTTTTCCTTC
CCTTTTTTTTCCTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTC
CGAGGATCCGCGGAATTCTTTGTTCAGTCCTGAGCCCCATTTTTTAATGG
GGTCATTTGATTTTCTGAAGCCCACCTTCTTGAGTTCTTTATATATGTTG
GATATTAGTCCCCTATCTGATTTAGGATAGGTACAGATCCTTTCTCAATC
TGTTGGTGGTCTTTTTGCCTTATTGATGGTGCCTTTTGCCTTGCTTAAAC
TTTGTAGTTTCATTATGTCCCATTTGCCAACTCTCGATCTTATTGCACTT
TCCATTTTTGTTCTGTTCTTTAATTTTTTTTCCTTTGTCCTTATCCTCAA
GGCTTTTTCCTTCTTTCTCCTCTATCATTTTCCGCGCCTCTGTCCTTTAT
GTGCACTTTTCTTGTTTTCTTTATTATTTGTCCTTCCCCCCCCCGATTTT
CCCCCGCTCTTTCTTCTTTTTCTTTCTTTTTTCTCTCCCCCTTTTTTTTC
TTTTCCCTTCTCCTCTCTTTTTTTTGTCTTCCCTTCTTCCCTTTTTTTTT
CTTATTTCTTTTTTTTCCTATTTTTTCCCCTTTCCTCCCTTTCTCTCTTT
TTTTTCTCCCCTTCCTTTTTTTTTTTTTCCCCCTTTTTTCTTTCCCCTTT
TTCCCCTTTTTTTTCCCCCTTTTTTTCCTTTTCCTCTTGCCCCCTTTTCT
TCTTGTTTTTTTTTTTTTTTTTTTTCCATCCTCTTATTCCCTCTTTTTGT
ATTTATTTTCTCCCCTCCCCCTTTTTG
GGCGCCGCCTGGTCGCAAATTTAGGTGAACTATAGAATGTTCTGCGAAAT
TCACCTGGCTGCCTTGACTTACTGGGGACACCTATCTTGCTCTAGCTTCC
TTTGTCTCAAAGGAGGGGTTTCTAAGAAGCAGGATGAGAACTATCAGTGT
TGAAAGCAAAGCTGGTTTACATTTCATGGAGTTTATGAAGGCAGGGTCCA
TCCGTTGTCACAGTATCCAGCCGCTGGTCATCTGTTTCTGTAAGGCCTGT
CTGGCCCTGGGCAACCCTGACTCACTTGTAACTCCGCGGCTAGACCCAAT
AGCGCAATCGCCTTTCATCGCAACCCTTTCTGATCTTGCTGGAGAGTGGG
CATGGGATACCATTACAAACACAACCTTCAAAGAAAGCTTGCAGCCCGTT
GATCTCTGAGCTGCTGGCTTAGCCTGTCAGATGCCACCCCAGTCACATGG
CTTCTGAGAGAGAGTCGTGCTGCTCCGGTACTTACTAGCTGACAGACCGA
GGAGGATGTAGCTAGCTGGGTCTTTTGAGAGACCACAGCGGCTGCATAAA
AGTGCCCCCGAGTTGCGATCCTGGTCTTTCTCAGACCCTTAGGCAAGAGT
TCGTCTTCTTGACTTTTGACTTACTGCGTCTCCTGCTCCCTGAACACTTT
TAGACAAATCCTTTTACGTCTCCCCA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no089_k05.g1 MSMg01no089_k05.g1 CHROMAT_FILE:
MSMg01no089_k05.g1 PHD_FILE: MSMg01no089_k05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:30 2005
         (325 letters)



>mm_chr2_126259945_126260669
          Length = 725

 Score =  613 bits (317), Expect = e-180
 Identities = 323/325 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   aattcacctggctgccttgacttactggggacacctatcttgctctagcttcctttgtct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct: 525 aattcacctggctgccttgacttactggggacacctatcttgctctagcatccttcgtct 466

                                                                       
Query: 61  caaaggaggggtttctaagaagcaggatgagaactatcagtgttgaaagcaaagctggtt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 caaaggaggggtttctaagaagcaggatgagaactatcagtgttgaaagcaaagctggtt 406

                                                                       
Query: 121 tacatttcatggagtttatgaaggcagggtccatccgttgtcacagtatccagccgctgg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tacatttcatggagtttatgaaggcagggtccatccgttgtcacagtatccagccgctgg 346

                                                                       
Query: 181 tcatctgtttctgtaaggcctgtctggccctgggcaaccctgactcacttgtaactccgc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tcatctgtttctgtaaggcctgtctggccctgggcaaccctgactcacttgtaactccgc 286

                                                                       
Query: 241 ggctagacccaatagcgcaatcgcctttcatcgcaaccctttctgatcttgctggagagt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ggctagacccaatagcgcaatcgcctttcatcgcaaccctttctgatcttgctggagagt 226

                                    
Query: 301 gggcatgggataccattacaaacac 325
           |||||||||||||||||||||||||
Sbjct: 225 gggcatgggataccattacaaacac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)