CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGTTTTATTCACATTCATTATTATTGCTCATAATAACTACAGTTCTG
GTGACCACTTCTTGTCCCCATGGACACCAGGCCTAGGAGTGCACAGACAT
ACATAATAAAGGCAAAACATTCGTGCACTACAAATGCAAATATATTAAGT
CTTTAAGAACATTAGAAATTGACCTCTGTTTTTCTTTCCCCCATTTTGGA
CACTCAGATATATGCCATAGCCTTAGAAATGTCTCCTTTCTAAAACGATT
CTGCGTCTACTGGGCCCTGCCCTGCTGGTGTTTTGTTGTTGTTGTTCAGA
TTATATGATGGGGAGAGAAGCCACTCTCATAACGCACAAGGACAGGGGGA
GAGGGAGCTTCAGTAAGAGATAACTGAAGGCAGGGAGGAAAAGATAGGGC
AGAAAATAAGATCTATCTAGATATTTGTCTTGATGGAAATGCATTCGTGA
TGTGATGGAACATGATGAAATTTGGAACAAGGAAGGAAAGGAAAAAAATG
TTGCTTTGAGCAGAAAACATCTGGACTGTGACCAGATGGACAAGAGCCAG
CCCCTGGGGTGTTCAGCAAAAAAAGTTGCAGGGCAGGGGGAGCAACCAGT
ACAAAGCTTCAATGGAAAACAGGGCTGGCAGAGTTCC

NAACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTTATGTCCTCTACCATCAT
CATGAGATATGCTTTTAAATCCAGGTCTACCTTTTCAGGTGTGTTAGGGT
GTCCTGGATTGGGCGAAGTGGGCGTTCTGGGTTCTGATGATGGTGAGTGG
TCCTGGCTTCTGTTAGTAGGATTCTTACGTTTACCTTTCGCCATCTGGCA
ATTTCTGGAGTTAGTTGTTATAGTTGTCTTTGTTAAGAGATTGTTCCTCT
GTTGATTTTGTTACCCTCTATCAGCAGGCGTGGGAGACAAGCTCTCTTCT
CTGAGTTTCAGTGTTCAGAGCAGTCTCTGTAGGCAAGCTCTCCTCTCTCA
GGGAAGGTGTACAGTTATCTGGTGTTTGGACCTCCTCCTGTCTGAAGGTG
AAGGCCCAAAACAGGATCTTTCCCAGAAGCTGTGTTGCTTTGGCCAGCAA
GGCGCCCAGTTGTCTGGAGTCTAAAATGTCGCCGCTTCAGAAGTTCTGTG
GACTCCTGTCCGAAAGCAGGCCGGCCCGTCTGGAAACTAATGTTGGCCTC
TGCTCTCCTAATCTCCGCTGACTTTTTGTCCCTTATCCTTTCTTGTCCTT
TCTCGTTTTTTTTTAAAGTCCCCTCATCCTTACCTTTTTCTTATCTTTTT
C

Query= MSMg01no089_n02.b1 MSMg01no089_n02.b1 CHROMAT_FILE:
MSMg01no089_n02.b1 PHD_FILE: MSMg01no089_n02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:42:46 2005
         (519 letters)



>mm_chr2_138040659_138041578
          Length = 920

 Score =  944 bits (488), Expect = 0.0
 Identities = 509/516 (98%), Gaps = 1/516 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagttttattcacattcattattattgctcataataactacagttctggtgacca 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagttttattcagattcattattattgctcataataactacagttctggtgacca 264

                                                                       
Query: 65  cttcttgtccccatggacaccaggcctaggagtgcacagacatacataataaaggcaaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 cttcttgtccccatggacaccaggcctaggagtgcacagacatacataataaaggcaaaa 324

                                                                       
Query: 125 cattcgtgcactacaaatgcaaatatattaagtctttaagaacattagaaattgacctct 184
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cattcgtgcactacaaatacaaatatattaagtctttaagaacattagaaattgacctct 384

                                                                       
Query: 185 gtttttctttcccccattttggacactcagatatatgccatagccttagaaatgtctcct 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtttttctttcccccattttggacactcagatatatgccatagccttagaaatgtctcct 444

                                                                       
Query: 245 ttctaaaacgattctgcgtctactgggccctgccctgctggtgttttgttgttgttgttc 304
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttctaaaacgattctgtgtctactgggccctgccctgctggtgttttgttgttgttgttc 504

                                                                       
Query: 305 agattatatgatggggagagaagccactctcataacgcacaaggacagggggagagggag 364
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||
Sbjct: 505 agattatatgatggggagagaagccactatcataacgcacaaggacagggggagagtgag 564

                                                                       
Query: 365 cttcagtaagagataactgaaggcagggaggaaaagatagggcagaaaataagatctatc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cttcagtaagagataactgaaggcagggaggaaaagatagggcagaaaataagatctatc 624

                                                                       
Query: 425 tagatatttgtcttgatggaaatgcattcgtgatgtgatggaacatgatgaaatttggaa 484
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tagatatttgccttgatggaaatgcattcgtgatgtgatggaacatgatgaaatttggaa 684

                                               
Query: 485 caaggaaggaaaggaaaaaaa-tgttgctttgagca 519
           ||||||||||||||||||||| ||||||||||||||
Sbjct: 685 caaggaaggaaaggaaaaaaaatgttgctttgagca 720


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 519
Length of database: 920
Length adjustment: 10
Effective length of query: 509
Effective length of database: 910
Effective search space:   463190
Effective search space used:   463190
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)