BAC Information

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BAC

Clone NameMSMg01-090B01
Chromosome2 (Build37)
Map Location 160,388,705 - 160,388,994
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043689, Gm826, Mafb
Downstream geneLOC100043892, Top1, Plcg1, Zhx3, Lpin3, Emilin3, Chd6, LOC100043693, LOC100043694, LOC383769, LOC629655, LOC383770, Ptprt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090B01.T7 (MSMg01no090_b01.b1)MSMg01-090B01.TJ (MSMg01no090_b01.g1)
ACCAG308396AG308397
length744739
length of high quality
(start - end)
290 (71 - 360)292 (72 - 363)
definitionCHROMAT_FILE: MSMg01no090_b01.b1 PHD_FILE: MSMg01no090_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:06 2005CHROMAT_FILE: MSMg01no090_b01.g1 PHD_FILE: MSMg01no090_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTCTGCCTTAACAGTAAGTGCCTTTACCCAGTGGTGGCTGGA
GAAGTAAGTTGTTGCCATTGGGATGTCATCCCGGTCTATGGTACTTGGTT
ATAACAGCTCAAACTGACAGCTTCTCAGAATCTTTGCCATGTCCACATGC
TTTGAAGTATCTGTATAGAAGTCTGGAGCAGATTCCTGGATATGTTCCGG
GACTCTGCACTGTCTCTCATTTACTATCTGGGGAAAGTGACATGCTGTAT
GCACTGGGTGAACCCCTTTCCGGGTACCATCCCCATTATTCTGGGTCAGA
GGCCTTTCTAGGGTGTTAGGCCCCCCCCCACCCCGAGGAATAGCTCTCTC
TGTGGAAGGAGAGGAAAGGCCATTTTCGACACTGTCTTTGATGGATGAGC
AAGGGGGTATAAAACTCGTGTATCTTAGGCCCAGGACAGCGGGAGCGAAG
GTCTGTGAGCTCGTAAAAATGCTCTGCTCTGTGTTCCTTTGCGAAAAATC
TATCTGTCTTCTGAAAAGGACCATCCTCACAGTGGTGGCTTAGTGACTGA
TTACGGAACTCCAGGTCAAATAGTGTTAGTCTTTGATCGTTTGAACCTGC
TTTGATCTTTGGACTATGTTGATTCTCACTATCTCTTAAATTCTCCTTCC
TGCTCATTTTGTGGTCTTCTTCTTTTTGAGTCTCCTGTCTTTCC
TTGCATGGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGGACTTAAGCTGGTGCCTTGCCACCATT
CATGATGACTTTTTTATCTAACAAATTTGAAACAAGAAGGCTGGAGAGAT
GGATCAAAGGGTAAAAGTATTTGCTGAGTAAGAGGAAGGACCTGAGTTCA
AATCCCCAGCATTCAAGTAAAAGGGCAGGCATATTATAGAGAGTGGAGAC
AGAAGGATTGCTGGGACTTTCTGGGTGCCACCCTAGCTCCAGCTTGGGTG
AGAGATCCTGTCTCAAAAAATATAAAGCAGAAAGTGATAGGGGAGAACAC
CTGGCCTCCTCCTCTGTTTTCTGCACCCCCCCCCCCCAGGCCCACACACA
TTGTGATAGGAACTGAGTATTGGGTGTCTACAGTAATCATCCCTAGTAGC
CCTAATAAGTATAATGGGTGGTTAGTAGCCAGTGGCCTCATGAAAGTTTG
TGGAAAAGGCCATCAGCCTCTGTCCCTAATCCTTCTGACAAAAGTTTCAA
ATGTGGTTTTGATGTGAACCCTTGATCTACTAGGCCGGCTGGTTATAAAA
CCGTATATTTTTAAGCGTCTGATATAGGTATTCTGACCACTTTATATCTA
GGTTCCAACGTTTAACTACATTGGTTATTTTGTCTAACCAACTGAGTAAG
GGAAGGAACCCTTTATAGCCCCTGCCATAAAAAAAATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_b01.b1 MSMg01no090_b01.b1 CHROMAT_FILE:
MSMg01no090_b01.b1 PHD_FILE: MSMg01no090_b01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:06 2005
         (290 letters)



>mm_chr2_160388407_160389096
          Length = 690

 Score =  553 bits (286), Expect = e-162
 Identities = 289/290 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtaagtgcctttacccagtggtggctggagaagtaagttgttgccattgggatgtcatc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 agtaagtgcctttacccagtggtggctggagaagtaagttgttgccattgggatgtcatc 529

                                                                       
Query: 61  ccggtctatggtacttggttataacagctcaaactgacagcttctcagaatctttgccat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 ccggtctatggtacttggttataacagctcaaactgacagcttctcagaatctttgccat 469

                                                                       
Query: 121 gtccacatgctttgaagtatctgtatagaagtctggagcagattcctggatatgttccgg 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 468 gtccacatgctttgaagtatctgtatagaagtctggagcagattcctggatacgttccgg 409

                                                                       
Query: 181 gactctgcactgtctctcatttactatctggggaaagtgacatgctgtatgcactgggtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 gactctgcactgtctctcatttactatctggggaaagtgacatgctgtatgcactgggtg 349

                                                             
Query: 241 aacccctttccgggtaccatccccattattctgggtcagaggcctttcta 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 aacccctttccgggtaccatccccattattctgggtcagaggcctttcta 299


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)