TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAGACTTGAGATTGAAAACTTGGAACATAAGAATTTAATTATCCTCAA
ACTCCTTTTACTTTAAGACCTCGACTGGCATCTAACAATAATTACCTTAG
CTTTAAAAGCCAACCAATTAAAAAAGAATGCCATGAAGAACTGTGGTAGC
ATGGGCCTTTCCTTGTATATTTTAAGTGTTACTATAAAAACTTCAACGTA
TTTCTTTCAATCATAGAGGGAATTACATTCCCAAATCTGGACTCTTCATA
TCACAGCTTACACACTATTTTCATTTTTAACCAAACCTTACAAGATTTTT
AGTACTACAGAGATTTTTAAAACTGTAATATAAGAAAAAAAAACTTCTAT
GGATGGGCAGCAGTAACCATAAATAGGTTATTTTCTGGCAGAAGGAAATA
TAAATTTACTTAAATGTAGTGTTACAGAGAAATTAAAAAAAACATTCCAA
CAGTCTACTGAATAGCAACTTGCTATAGCTTTTTTTTTAAAAACAATAAA
AGGTTAACTATTTTAAATGATAGGGCAGACATATTACAATTCCAATAATT
AGTCTTAACTACGCCTCCTAAATCTTGAGTTTTAGACTTTACTTCAAACT
GTTTTAAAGCTGTAGCTTTGAATTTTGCTATGTGGGTGCA

NATCGATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXACATTTTCATAGACCTAGTTCTCTT
GGCAGCACATAATAAAAATTGAGTATAAAATACCATTTAGGGAACATCTG
TTTTGCACACATGTCGGGTTCATGTTTTTATTGAGGTAGGGTCTCAGCCT
GCTGTCTGAGACATGAAACTCACCATGTCAACCAGGCAGGCCTCAAACTT
GCAGCAATCCACTTGCCACTCCCCGAGTGTTAGAATTGTAAGCCAGAGCC
ACATGGCTCGTGCAGTGTTTGGGCAGGGGACTAGGGGGGTGGGTGCAGGG
GGGAGTATTTTTTTTTTTCCCCCCCCCCCCCCTNNNTTTTTATTATCTTC
TTGGTNGTAGTTTCTCCCCCCACAAAAAAAAAAACACATTGTGGGGGGGG
GCGAGCCTATCTTTCATATTCCTTCTTTGCTCTATCCTGCACTTACTGAA
CTTCCTCTTTGCCTTTTCGTATTTTTCTTCACTTTTCCGGCTCATTATCT
ATTGCTTTCAAGCCATCCTCTGTTTTTTTTCTCCTATTGCTTCATATCCT
ACTATTTATTTCTGTCCTTTCTCCTTTTTTTACCCACCTCTTGTCTTTTC
GTCATCATTTTCTCTTTTCTTTATCTCAATCCTTCAACTCCTTCTTTTTT
CTCTTTTTCTACTTCTCCTT

Query= MSMg01no090_b18.b1 MSMg01no090_b18.b1 CHROMAT_FILE:
MSMg01no090_b18.b1 PHD_FILE: MSMg01no090_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:09 2005
         (590 letters)



>mm_chr2_61625133_61626125
          Length = 993

 Score = 1089 bits (563), Expect = 0.0
 Identities = 583/591 (98%), Gaps = 5/591 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagacttgagattgaaaacttggaacataagaatttaattatcctcaaactcct 63
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 793 ggaattcagacttgagattgaaaacttggagcataagaatttaattatcctcaaactcct 734

                                                                       
Query: 64  tttactttaagacctcgactggcatctaacaataattaccttagctttaaaagccaacca 123
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 tttactttaagacct-gactggcatctaacaataattaccttagctttaaaagccaacca 675

                                                                       
Query: 124 attaaaaaagaatgccatgaagaactgtggtagcatgggcctttccttgtatattttaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 674 attaaaaaagaatgccatgaagaactgtggtagcatgggcctttccttgtatattttaag 615

                                                                       
Query: 184 tgttactataaaaacttcaacgtatttctttcaatcatagagggaattacattcccaaat 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 614 tgttactataaaaacttcaacgtatttctttcaatcatagagggaattacattcccaaat 555

                                                                       
Query: 244 ctggactcttcatatcacagcttacacactattttcatttttaaccaaaccttacaagat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 554 ctggactcttcatatcacagcttacacactattttcatttttaaccaaaccttacaagat 495

                                                                       
Query: 304 ttttagtactacagagatttttaaaactgtaatataag--aaaaaaaaacttctatggat 361
           ||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||
Sbjct: 494 ttttagtactacagagatttttaaaactgtaatataagaaaaaaaaaaacttctatggat 435

                                                                       
Query: 362 gggcagcagtaaccataaataggttattttctggcagaaggaaatataaatttacttaaa 421
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 gggcagcagtaaccataaataggttattttctggcagaaggaaatataaatttacttaaa 375

                                                                       
Query: 422 tgtagtgttacagagaaattaaaaaaaacattccaacagtctactgaatagcaacttgct 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 tgtagtgttacagagaaattaaaaaaaacattccaacagtctactgaatagcaacttgct 315

                                                                       
Query: 482 atagc--tttttttttaaaaacaataaaaggttaactattttaaatgatagggcagacat 539
           |||||  ||||||||| |||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 314 atagcttttttttttttaaaacaataaaaggttaactattttaaatgatagggcagaaat 255

                                                              
Query: 540 attacaattccaataattagtcttaactacgcctcctaaatcttgagtttt 590
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 attacaattccaataattagtcttaactacgcctcctaaatcttgagtttt 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 5
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 590
Length of database: 993
Length adjustment: 10
Effective length of query: 580
Effective length of database: 983
Effective search space:   570140
Effective search space used:   570140
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)