BAC Information

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BAC

Clone NameMSMg01-090C05
Chromosome2 (Build37)
Map Location 114,455,418 - 114,455,699
singlet/doubletsinglet
Overlap geneAtpbd4
Upstream geneFmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770
Downstream geneLOC100043219, LOC100043222, LOC100043232, LOC100043236, BC052040
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090C05.T7 (MSMg01no090_c05.b1)MSMg01-090C05.TJ (MSMg01no090_c05.g1)
ACCAG308448AG308449
length693694
length of high quality
(start - end)
562 (65 - 626)285 (74 - 358)
definitionCHROMAT_FILE: MSMg01no090_c05.b1 PHD_FILE: MSMg01no090_c05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:12 2005CHROMAT_FILE: MSMg01no090_c05.g1 PHD_FILE: MSMg01no090_c05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTACTACCTTGTTTGCTAACTATTTTAAGTTTTATTGCAAAATGGT
CAGATAGGGTGCATGGGGCTATTTTAATTCTGCATTTGTTAAAGTTTGTT
TTGTGATCTAGGAAATGAATGTGGTCCAGTTTTAGAAGCTTACCGGGAGT
GCTGAATAGATAGTGGATATCTATTGTCTTACAGTTTCTAGTGATGTAAA
GAGACACCATGATCCCAGAAACTCTAATAAAGGAAAATATTTAATTGGGG
ATGCCTTACAGTTTCAGAAGTTTAGTACATTATCATCATGGTTGGAAGCA
TGGTGGCAAGGATGCCACCATGGTGTTGGAGCAGTAATTGAGAGCTGTAC
ATCTGAGTCTGCAGATAATAGGAAGAGACTGAGATGCAGTTAGGCTTGGC
TTGAGCTTCTGAGACCTCAAAGCCAGCACCGAGTGGCTCATTTCCTCCAA
GGCCACACCTCCTAATAGTGCCACTCCATATGGGCTTATGGAGATCCTTT
TTATTCAAACCGCCACATCTATGGATGATCTCTTTGTTTCCCCCACAAGG
TTTTACAGAAACAAACCTAGGTCACATTTATCTAAACATATTTTATTCTT
CTGAATGCTGTATTTACTTTTTCTTTTAGATTATGAATTGTTG
GATTGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGCTTTCTAAGACATATGGCATTAGTC
TTTCCTCTCAGGTGTCCTATGTGAGTGTTCTGATGCTTGGCCTATTCTCA
AGGGAAGTTAGGGAGAGGTGAGCCCAAAGATGCCAGATTTCATCATTTGA
TTTTTTTTTCCATTGAACTTTACTTTTTCATGTTCTTTTAGAATTTAACT
ACATTGTTAATTTTAGCAATTAACTACGTTATCTATAATATTGAGGGAGT
GTATTTTCATTAATTCATTTGTAAAGAGTCTTAAGCAAGGAATTCCTTTT
GAAAATTATATGAACTCACAGCTCTACAGGACTTATTTTCTTCTAAGAGA
ATATAAAGAATATGAAAATGTATGTGAAGAGTCTTATAAAGAAACCGTGA
CATGCTTGTTATACAGAGATCATTGAGCAGTGGCAGAACATCGTAGCTCT
TTGCAGTGTCCATGATGTATTTGGGGCAGTTACTGCTCTGCACGTCGTTG
TGAAGTTCAAGTTGCTGAATGGATGATCTAACTTCAGACAAAAGTCAGTC
CAAAGCCATTTCCTTAGATGTCAATTAAAGGATGTTGACAAGTCAAAAAG
AAGACACATGATATACACTCACTGATAAGTGGACATTAACCCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_c05.g1 MSMg01no090_c05.g1 CHROMAT_FILE:
MSMg01no090_c05.g1 PHD_FILE: MSMg01no090_c05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:12 2005
         (285 letters)



>mm_chr2_114455218_114455899
          Length = 682

 Score =  516 bits (267), Expect = e-151
 Identities = 280/285 (98%), Gaps = 3/285 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctttctaagacatatggcattagtctttcctctcaggtgtcctatgtgagtgttctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 agctttctaagacatatggcattagtctttcctctcaggtgtcctatgtgagtgttctga 423

                                                                       
Query: 61  tgcttggcctattctcaagggaagttagggagaggtgagcccaaagatgccagatttcat 120
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 422 tgcttggcctattctcaagggaagttagggagaggt--gcccaaagatgccagatttcat 365

                                                                       
Query: 121 catttgatttttttttccattgaactttactttttcatgttcttttagaatttaactaca 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 catttga-ttttttttccattgaactttactttttcatgttcttttagaatttaactaca 306

                                                                       
Query: 181 ttgttaattttagcaattaactacgttatctataatattgagggagtgtattttcattaa 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttgttaattttagcagttaactacgttatctataatattgagggagtgtattttcattaa 246

                                                        
Query: 241 ttcatttgtaaagagtcttaagcaaggaattccttttgaaaatta 285
           ||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 245 ttcatttgtaaagagtcgtaagcaaggaattccttttgaaaatta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 682
Length adjustment: 9
Effective length of query: 276
Effective length of database: 673
Effective search space:   185748
Effective search space used:   185748
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)