BAC Information

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BAC

Clone NameMSMg01-090C13
Chromosome2 (Build37)
Map Location 57,211,395 - 57,211,672
singlet/doubletsinglet
Overlap geneGpd2
Upstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910
Downstream geneLOC271788, Galnt5, A330104H05Rik, LOC667026, Pscdbp, LOC100042926, Acvr1c, LOC667062
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090C13.T7 (MSMg01no090_c13.b1)MSMg01-090C13.TJ (MSMg01no090_c13.g1)
ACCAG308462AG308463
length667683
length of high quality
(start - end)
292 (23 - 314)281 (56 - 336)
definitionCHROMAT_FILE: MSMg01no090_c13.b1 PHD_FILE: MSMg01no090_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:14 2005CHROMAT_FILE: MSMg01no090_c13.g1 PHD_FILE: MSMg01no090_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GATCCGCGGAATTCAAAGCACTTTGGTCTTCAAAGAGTTCCTGGTCAATC
AGGGCTACATCGTGAGAACTTGACTCACAAAGTGTAGAGGAATTTTAATC
CAGCAACATGGCTGCTCTTGCAAGGGATCATATCCAAAGACCTTCTACGT
CTGTGTGATCCAGCTGGAATGCAGACACACCTTGGAATACTGTACTTTCT
GGCTGGATAATGCAGACTCACGACACACCTTTAATCTCTCTGGCTGGAAT
GCAGACACACCCTTAGTATACACCTTTAAGGTAAAATTAGTTTGTAAAAG
GAAGCAGCCATATTGTATTTTGACCCCCCCCCCCCCCCGCAGACGTGACG
AATCAAATAAAGATTTGACAGATGAGTCAGAGATATAGGATATATCCTAC
TCATTTGACAACAGGAGAGGATGAGAGGCTACAAAAGAGCAGAGACTGAT
ACAGAGATATAAAGGCGGAGGCGTGGGTGCTATATGTGCCTAGCACTTTT
TCTTTCACCAACTTACAGAATACCGCTATATCATTATTCTATTTCTATAT
TCACTCTATACTTTTTCCTTTACTCCTTATTCTACCATTATATTGTCCTC
TATTTTCATTATTTATCTCTACTCTCTCTCATCCCTATAATTCTATACCC
AACTCTCATTCCCCTCT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCATCTTTAGGAATCTATGAACACTTGAAGGTTAGGCTAGTGCCCA
ACACTCATCTGTACTATACGTGACAAGACGCCTAATAATACTCATTTACT
ACATACACATGTGAATATGCCAGGGAGCTCTCTGTCCATGAACCATAGAA
AGAGGTTTAGAGCTGATGGTACCTTGACCTTGGACTTCATATTAGAAACT
GAAGGGATTAATTTGAGAATTAAATGTTGGCTATTTGAAGCAGTCTGATT
TACTATTAGCCTCTGAGTCACAATGCCCTCTTATTTAGTCNCATCANANG
CCCAANCCAAGAAGCCACTCCTTTCTATGTCTTCTATATCCTTCCTTAAA
AAAAAAAAATCTACACTTTGAAGTGTTCCTAGACTAGTTCCAGGGTCACT
TTCCTCGCCTACCAGTATTCAGTGCCCTCCCCATGTCCCCACGACTAATA
TAATGTCTCAAAAGCCAACTGTAAAATGTACATTCTGCTAAGGCCTCTGG
ACACATCCAGTGATAGTCTGGATTATGTTCTCATATAATCCTCCAAAGTT
GCTAAAATGGAAAACACTGTCCTACTTGGCGAGAATTCAGTACTTTGCCT
TAAACATCTCATGATTCTACTCCCTGGTTCCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_c13.g1 MSMg01no090_c13.g1 CHROMAT_FILE:
MSMg01no090_c13.g1 PHD_FILE: MSMg01no090_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:14 2005
         (281 letters)



>mm_chr2_57211195_57211875
          Length = 681

 Score =  499 bits (258), Expect = e-146
 Identities = 273/278 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   catctttaggaatctatgaacacttgaaggttaggctagtgcccaacactcatctgtact 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 478 catctttaggaatctatgaacacttgaaggttaggctagtgcccaacactcatctgcact 419

                                                                       
Query: 61  atacgtgacaagacgcctaataatactcatttactacatacacatgtgaatatgccaggg 120
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 418 atacgtgacaagacgcccaataatactcatttactacatacacatgtgaatatgccaagg 359

                                                                       
Query: 121 agctctctgtccatgaaccatagaaagaggtttagagctgatggtaccttgaccttggac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 358 agctctctgtccatgaaccatagaaagaggtttagagctgatggtaccttgaccttggac 299

                                                                       
Query: 181 ttcatattagaaactgaagggattaatttgagaattaaatgttggctatttgaagcagtc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 298 ttcatattagaaactgaagggattaatttgagaattaaatgttggctatttgaagcagtc 239

                                                 
Query: 241 tgatttactattagcctctgagtcacaatgccctctta 278
           |||  |||||||||||||||||||||||||||||||||
Sbjct: 238 tgacgtactattagcctctgagtcacaatgccctctta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 281
Length of database: 681
Length adjustment: 9
Effective length of query: 272
Effective length of database: 672
Effective search space:   182784
Effective search space used:   182784
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)