Query= MSMg01no090_d16.b1 MSMg01no090_d16.b1 CHROMAT_FILE:
MSMg01no090_d16.b1 PHD_FILE: MSMg01no090_d16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:19 2005
(317 letters)
>mm_chr2_170918476_170919192
Length = 717
Score = 557 bits (288), Expect = e-163
Identities = 306/312 (98%)
Strand = Plus / Minus
Query: 5 gaattcaggtaaattacactattcagtaattaataggagataaagttctaaatgctgtga 64
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 516 gaattcaggtaaattacactattcagtaattaataggagataaagttcaaaatgctgtga 457
Query: 65 aacaccaggcctccttccttcttactcagaaaccaaaggcaacatgaagcttcctcatct 124
|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 456 aacaccaggcatctttccttcttactcagaaaccaaaggcaacatgaagcttcctcatct 397
Query: 125 gccgcgctttatctgtttgattggatatacttttacatgatattagtctgcattgtctct 184
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 396 gccgcgctttatctgttcaattggatatacttttacatgatattagtctgcattgtctct 337
Query: 185 gtaggcaggcagcaatctccatacacacgtaatgggtgtattcttgggtatctgtttttg 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 gtaggcaggcagcaatctccatacacacgtaatgggtgtattcttgggtatctgtttttg 277
Query: 245 gaggaagctgtaataatcagtttttaacaaacaattgaaccatcatttcaaatcctgggc 304
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 276 gaggaagctgtaataatcagtttttaacaaacaattgaaccatcatttcaagtcctgggc 217
Query: 305 tctatcacagga 316
||||||||||||
Sbjct: 216 tctatcacagga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 317
Length of database: 717
Length adjustment: 9
Effective length of query: 308
Effective length of database: 708
Effective search space: 218064
Effective search space used: 218064
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no090_d16.g1 MSMg01no090_d16.g1 CHROMAT_FILE:
MSMg01no090_d16.g1 PHD_FILE: MSMg01no090_d16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:19 2005
(285 letters)
>mm_chr2_170777137_170777821
Length = 685
Score = 439 bits (227), Expect = e-128
Identities = 266/285 (93%), Gaps = 14/285 (4%)
Strand = Plus / Plus
Query: 3 tgaaataataaagacattggaggttttgattttgaatgttttttttcccca-ttgtgggt 61
|||||||||||||||||||||||||||||||||||||||||||||| |||| || |||||
Sbjct: 203 tgaaataataaagacattggaggttttgattttgaatgtttttttt-cccatttatgggt 261
Query: 62 tttgttttaagataagttattatttctctgtgttgtaaactactataggaataatagtag 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 tttgttttaagataagttattatttctctgtgttgtaaactactataggaataa------ 315
Query: 122 tttattttttgaattatttctgag-aaactaataaataagccaaatcacttacagatgtc 180
| ||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 316 ---a--ctttgaattatttctgagaaaattaataaataagccaaatcacttacagatgtc 370
Query: 181 cacattcttagtagaattagattcaaatatcaagttttactcttaacaaatacacaaaca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 371 cacattcttagtagaattagattcaaatatcaagttttactcttaacaaatacacgaaca 430
Query: 241 attgatgtaatattcttgctcatttggttttaatgttgagaagac 285
|||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 431 attgatgtaatattcttgctcatttggttttagtgttgagaagac 475
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 685
Length adjustment: 9
Effective length of query: 276
Effective length of database: 676
Effective search space: 186576
Effective search space used: 186576
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
