Query= MSMg01no090_h13.b1 MSMg01no090_h13.b1 CHROMAT_FILE:
MSMg01no090_h13.b1 PHD_FILE: MSMg01no090_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:38 2005
(245 letters)
>mm_chr2_114372466_114373110
Length = 645
Score = 443 bits (229), Expect = e-129
Identities = 238/241 (98%)
Strand = Plus / Plus
Query: 5 gaattcaaactctgcctgagccagttattatattgtaagcaagctagcaagcaaacacac 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaactctgcctgagccagttattatattgtaagcaagctagcaagcaaacacac 264
Query: 65 aagcatatgacaattcacttccccacataaaacagatataaacacataattaaaatataa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagcatatgacaattcacttccccacataaaacagatataaacacataattaaaatataa 324
Query: 125 acaattaaaaatataggatataaatcatgaggcagatgagtcaaaatatttcaaggcttg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaattaaaaatataggatataaatcatgaggcagatgagtcaaaatatttcaaggcttg 384
Query: 185 tgataggtaaaatacagtgactatgatgataaatgctgtgttctccatagtatcatgaaa 244
|| ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgttaggtaaaatatagtgacaatgatgataaatgctgtgttctccatagtatcatgaaa 444
Query: 245 a 245
|
Sbjct: 445 a 445
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space: 150096
Effective search space used: 150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no090_h13.g1 MSMg01no090_h13.g1 CHROMAT_FILE:
MSMg01no090_h13.g1 PHD_FILE: MSMg01no090_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:38 2005
(289 letters)
>mm_chr2_114455214_114455899
Length = 686
Score = 524 bits (271), Expect = e-153
Identities = 284/289 (98%), Gaps = 3/289 (1%)
Strand = Plus / Minus
Query: 1 agctttctaagacatatggcattagtctttcctctcaggtgtcctatgtgagtgttctga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 agctttctaagacatatggcattagtctttcctctcaggtgtcctatgtgagtgttctga 427
Query: 61 tgcttggcctattctcaagggaagttagggagaggtgagcccaaagatgccagatttcat 120
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 426 tgcttggcctattctcaagggaagttagggagaggt--gcccaaagatgccagatttcat 369
Query: 121 catttgatttttttttccattgaactttactttttcatgttcttttagaatttaactaca 180
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 catttga-ttttttttccattgaactttactttttcatgttcttttagaatttaactaca 310
Query: 181 ttgttaattttagcaattaactacgttatctataatattgagggagtgtattttcattaa 240
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ttgttaattttagcagttaactacgttatctataatattgagggagtgtattttcattaa 250
Query: 241 ttcatttgtaaagagtcttaagcaaggaattccttttgaaaattagatg 289
||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 249 ttcatttgtaaagagtcgtaagcaaggaattccttttgaaaattagatg 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 686
Length adjustment: 9
Effective length of query: 280
Effective length of database: 677
Effective search space: 189560
Effective search space used: 189560
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|