BAC Information

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BAC

Clone NameMSMg01-090H13
Chromosome2 (Build37)
Map Location 114,372,670 - 114,455,699
singlet/doubletdoublet
Overlap geneAtpbd4
Upstream geneFmn1, Grem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770
Downstream geneLOC100043219, LOC100043222, LOC100043232, LOC100043236, BC052040
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-090H13.T7 (MSMg01no090_h13.b1)MSMg01-090H13.TJ (MSMg01no090_h13.g1)
ACCAG308692AG308693
length751734
length of high quality
(start - end)
245 (44 - 288)289 (74 - 362)
definitionCHROMAT_FILE: MSMg01no090_h13.b1 PHD_FILE: MSMg01no090_h13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:38 2005CHROMAT_FILE: MSMg01no090_h13.g1 PHD_FILE: MSMg01no090_h13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:43:38 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(114,372,670 - 114,372,910)(114,455,414 - 114,455,699)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAACTCTGCCTGAGCCAGTTATTATATTGTAAGCAAGCTAGCAAGCA
AACACACAAGCATATGACAATTCACTTCCCCACATAAAACAGATATAAAC
ACATAATTAAAATATAAACAATTAAAAATATAGGATATAAATCATGAGGC
AGATGAGTCAAAATATTTCAAGGCTTGTGATAGGTAAAATACAGTGACTA
TGATGATAAATGCTGTGTTCTCCATAGTATCATGAAAATGGATTTCAAGT
GAAAGAAAAATTAGTCAGACTTATTATAAGGATTTATCACCAGCAAAGCT
AAATTGAAGAATATTATTGTGACCCACCCCCCCAGGAGTAAGTTATCCCA
GAGTTAAACAAGTACATTACTAGATAATAAAGAACAGTGCGAGGGAGAAT
AGGAGGCAATATACATAATTTGGCCTATAACCAAAATAATACATCACATA
AGATCGATACAGGTTGTACGATTATAACGCAAGGTATTATCTCTTGTCAC
TGTATTGTATCCATGACTTCCTGTATCAGATCACCACTACGCCTCGATTC
GAAGCAAAGTATACTGTTATCCAACCTTATTATGGAATATCAAAATCGGA
ATCCCTATTAAGATTATACACTATATAACATTACAAATAACTTATGACCT
CCCTACTCACATGACGGATGAAAAATCAAATCAAAACACAATAAGGTCGA
T
CAATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAGCTTTCTAAGACATATGGCATTAGTC
TTTCCTCTCAGGTGTCCTATGTGAGTGTTCTGATGCTTGGCCTATTCTCA
AGGGAAGTTAGGGAGAGGTGAGCCCAAAGATGCCAGATTTCATCATTTGA
TTTTTTTTTCCATTGAACTTTACTTTTTCATGTTCTTTTAGAATTTAACT
ACATTGTTAATTTTAGCAATTAACTACGTTATCTATAATATTGAGGGAGT
GTATTTTCATTAATTCATTTGTAAAGAGTCTTAAGCAAGGAATTCCTTTT
GAAAATTAGATGAACTGAGAGCTTATAGGACTTATTTTCTTCTAAGAGAA
TATAAAGAATATGAAAATGTATGTGAAGAGTCTTATAAAGAAACCGTGAC
ATGCTTGTTATACAGAGATCATTGACCAGTGGCTGAACATCGTAGCTCTC
TGCAGTGTCCTTGAAGTATTTGGTGCAGTTACTGCTCTGCACGTCGTTGT
GAACTTCAAGTTGCTGAATGCATGATCTAACATCTAAATACAAGTTAGTC
CAAAGCCCATTTCTCTAAATGTCAATTTATAGGGATGTTGACAAGTCTTA
TAGAATATACTTGTATTTACCTCCTCTGAATATTGCATATTACCCCCAGA
AACTTAAAATTCCCGTAGATCCACTTTGTAAAAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no090_h13.b1 MSMg01no090_h13.b1 CHROMAT_FILE:
MSMg01no090_h13.b1 PHD_FILE: MSMg01no090_h13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:38 2005
         (245 letters)



>mm_chr2_114372466_114373110
          Length = 645

 Score =  443 bits (229), Expect = e-129
 Identities = 238/241 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaactctgcctgagccagttattatattgtaagcaagctagcaagcaaacacac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaactctgcctgagccagttattatattgtaagcaagctagcaagcaaacacac 264

                                                                       
Query: 65  aagcatatgacaattcacttccccacataaaacagatataaacacataattaaaatataa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagcatatgacaattcacttccccacataaaacagatataaacacataattaaaatataa 324

                                                                       
Query: 125 acaattaaaaatataggatataaatcatgaggcagatgagtcaaaatatttcaaggcttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 acaattaaaaatataggatataaatcatgaggcagatgagtcaaaatatttcaaggcttg 384

                                                                       
Query: 185 tgataggtaaaatacagtgactatgatgataaatgctgtgttctccatagtatcatgaaa 244
           || ||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgttaggtaaaatatagtgacaatgatgataaatgctgtgttctccatagtatcatgaaa 444

            
Query: 245 a 245
           |
Sbjct: 445 a 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no090_h13.g1 MSMg01no090_h13.g1 CHROMAT_FILE:
MSMg01no090_h13.g1 PHD_FILE: MSMg01no090_h13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:43:38 2005
         (289 letters)



>mm_chr2_114455214_114455899
          Length = 686

 Score =  524 bits (271), Expect = e-153
 Identities = 284/289 (98%), Gaps = 3/289 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   agctttctaagacatatggcattagtctttcctctcaggtgtcctatgtgagtgttctga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 agctttctaagacatatggcattagtctttcctctcaggtgtcctatgtgagtgttctga 427

                                                                       
Query: 61  tgcttggcctattctcaagggaagttagggagaggtgagcccaaagatgccagatttcat 120
           ||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 426 tgcttggcctattctcaagggaagttagggagaggt--gcccaaagatgccagatttcat 369

                                                                       
Query: 121 catttgatttttttttccattgaactttactttttcatgttcttttagaatttaactaca 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 catttga-ttttttttccattgaactttactttttcatgttcttttagaatttaactaca 310

                                                                       
Query: 181 ttgttaattttagcaattaactacgttatctataatattgagggagtgtattttcattaa 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ttgttaattttagcagttaactacgttatctataatattgagggagtgtattttcattaa 250

                                                            
Query: 241 ttcatttgtaaagagtcttaagcaaggaattccttttgaaaattagatg 289
           ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 249 ttcatttgtaaagagtcgtaagcaaggaattccttttgaaaattagatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 686
Length adjustment: 9
Effective length of query: 280
Effective length of database: 677
Effective search space:   189560
Effective search space used:   189560
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)