BAC Information

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BAC

Clone NameMSMg01-091H22
Chromosome2 (Build37)
Map Location 135,542,936 - 135,651,810
singlet/doubletdoublet
Overlap genePlcb4
Upstream geneLOC627897, LOC433478, Plcb1, LOC100043487, LOC100043786, LOC100043788
Downstream gene6330527O06Rik, Pak7, LOC668910, LOC100043492, BC034902, Ankrd5, Snap25, LOC668911
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091H22.T7 (MSMg01no091_h22.b1)MSMg01-091H22.TJ (MSMg01no091_h22.g1)
ACCAG309430AG309431
length826767
length of high quality
(start - end)
385 (92 - 476)194 (128 - 321)
definitionCHROMAT_FILE: MSMg01no091_h22.b1 PHD_FILE: MSMg01no091_h22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:02 2005CHROMAT_FILE: MSMg01no091_h22.g1 PHD_FILE: MSMg01no091_h22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(135,542,936 - 135,543,320)(135,651,617 - 135,651,810)
sequence
AAAATACTTTTATTTTCTTCTTACATTTCTTTNTTTCTCTTNNCCTTATC
TATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CTCGTTTTTTTTTTTCTTTAAATCTTTCAGCTCAAGGCAGCCGGTTAGGG
AGTTCTGCCTCCAGACCTCTAAGAACCCAGAGCATGTTTGCAGATGCCAT
CACTGTTGGGAGCGAGCTGGTCAGACTCCGACCTGCCAGTCAGCTCTTTT
AGTGGTCTGCTTAACAGGCTGGTCCGGCTGGCATCGGTGTGATTATCCAG
CCCTAGAGGTAGAGTTCTGGGCGCTGCCCCAAGAAAGACAACCTCATCTT
GTATCCAGCTACATGTCCAAGGAGGGAAGCTGACGGAGCACAGGGCTTTC
CCGGGTGCCTCCCCTGGGCGGCTTGCCTTATTGCTGGATGAGGTTGCAGC
AAGCCCATGAAAAGGAGGCCTTGGGAGGACGCAGGTGGCTCCGGAAATCC
TGATTGCAGATTCCCACTTCTCACTTCCTCCTTTGGCCAAATGCTTCTTT
GTTAATTTCCCCTCACCCATGTCCTGCCTGTTCTGGTTTTCCTCCTCATA
GGTTTGTAAATTCCCGCCGGCATACTTTTGCTGCCCCCCATGTCCTTTCT
CCTCCTCAATTTGACTCTGCCTTCCCGGGTGGTCAAGGCAACTCTGTCCT
CTTTTTCCTTGCCCTTTAATTTGTTTTCGGCCTATTTCCTCGTTTCTCCT
TTGATTCAAATCCCGGCCCTTTCCCCTTGACCCCAGTCCCCGGTCCTTGG
ATTTCCTTTCCAGGGCCTTTCCCACC
TTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCCTCGCAAAAATATTTTTTTGGTTACCCTGACTCTCTTAGCA
TTCTGTGAGGACCTCAATCTTACCCCATATAATTAATTAGTCAGAGAAGT
GATCAGCCATGCAAAAGAAGAGAAAGTGTCAACAGCAGACAAGAATAGAA
GTCAGAGACAGAAAATCAGGGGTGATACATGCTACAGAGCAGTATCACAA
AGCAAGAAACACAGTAGACCAGAAACTGGCTGCAGTAGGTGGCCCTGGCT
GCAGCTGGCAATATAACAAGAAATTATTTTTATAGACTACTCCATTATGC
TTATTGGACAGCAAATGTGTATTCGCTGGGCTAACACAGCCATGCACACT
GGGCATGCCAGGTCTCACGTCCTTGACTGTTCAAACACCACGCAGAATAG
TCCGGCCAGTCAGATAGAACAGAATCCCAGTAACCTAGCATTCTTAAGGG
TATATTGTGGGCTTTACAGAACAATATTCTGCCATGTCACTGAGCACACA
ATTGCCAAGCATATCTTTGGGGACACTTCCTGACCAGTTTCGTTCCTAGA
GCACAGCTCCTATGCAGTCCCCCTGACCACGCCCTCCACAAGCTGAGCAC
CCTGTCCTTGTTGAGTTCCCCGGGATCTTTACTTTTAAATCCCCCCCCTT
TTCTTTATACGACGGCCCCCCCAATCAGTTCTGGCTTGGCCGGAACTCCC
CTGCATGGCCCAACAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_h22.b1 MSMg01no091_h22.b1 CHROMAT_FILE:
MSMg01no091_h22.b1 PHD_FILE: MSMg01no091_h22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:02 2005
         (385 letters)



>mm_chr2_135542736_135543520
          Length = 785

 Score =  663 bits (343), Expect = 0.0
 Identities = 373/385 (96%), Gaps = 4/385 (1%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcg----tttttttttttctttaaatctttcagctcaaggcagccggttaggga 60
           |||||||||    ||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 201 gaattctcgttttttttttttttttttttaatctttcagctcaaggcagccggttaggga 260

                                                                       
Query: 61  gttctgcctccagacctctaagaacccagagcatgtttgcagatgccatcactgttggga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttctgcctccagacctctaagaacccagagcatgtttgcagatgccatcactgttggga 320

                                                                       
Query: 121 gcgagctggtcagactccgacctgccagtcagctcttttagtggtctgcttaacaggctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcgagctggtcagactccgacctgccagtcagctcttttagtggtctgcttaacaggctg 380

                                                                       
Query: 181 gtccggctggcatcggtgtgattatccagccctagaggtagagttctgggcgctgcccca 240
           |||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||
Sbjct: 381 gtccggctggcatcggtgtgattatccagccctagaggcagagctctgggcgctgcccca 440

                                                                       
Query: 241 agaaagacaacctcatcttgtatccagctacatgtccaaggagggaagctgacggagcac 300
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 441 agaaagacaacctcatcttgtatccagctacatgtccaaggaaggaagctgacggagcac 500

                                                                       
Query: 301 agggctttcccgggtgcctcccctgggcggcttgccttattgctggatgaggttgcagca 360
           |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||
Sbjct: 501 agggctttcccgggtgcctcccctggccggcttgccttattgctggatgaggctgcagca 560

                                    
Query: 361 agcccatgaaaaggaggccttggga 385
           ||||||||||||||||| |||||||
Sbjct: 561 agcccatgaaaaggagggcttggga 585


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 385
Length of database: 785
Length adjustment: 9
Effective length of query: 376
Effective length of database: 776
Effective search space:   291776
Effective search space used:   291776
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no091_h22.g1 MSMg01no091_h22.g1 CHROMAT_FILE:
MSMg01no091_h22.g1 PHD_FILE: MSMg01no091_h22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:02 2005
         (194 letters)



>mm_chr2_135651417_135652010
          Length = 594

 Score =  375 bits (194), Expect = e-109
 Identities = 194/194 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tataattaattagtcagagaagtgatcagccatgcaaaagaagagaaagtgtcaacagca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 tataattaattagtcagagaagtgatcagccatgcaaaagaagagaaagtgtcaacagca 335

                                                                       
Query: 61  gacaagaatagaagtcagagacagaaaatcaggggtgatacatgctacagagcagtatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gacaagaatagaagtcagagacagaaaatcaggggtgatacatgctacagagcagtatca 275

                                                                       
Query: 121 caaagcaagaaacacagtagaccagaaactggctgcagtaggtggccctggctgcagctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 274 caaagcaagaaacacagtagaccagaaactggctgcagtaggtggccctggctgcagctg 215

                         
Query: 181 gcaatataacaaga 194
           ||||||||||||||
Sbjct: 214 gcaatataacaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)