BAC Information

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BAC

Clone NameMSMg01-091I15
Chromosome2 (Build37)
Map Location 170,112,960 - 170,181,992
singlet/doubletdoublet
Overlap geneLOC100043739, Bcas1
Upstream geneEG668954, Tshz2, LOC100043737, LOC100043910, Zfp217, Silg111
Downstream geneLOC228916, Cyp24a1, Pfdn4, 4930470P17Rik, Dok5, LOC668955, LOC100043743
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091I15.T7 (MSMg01no091_i15.b1)MSMg01-091I15.TJ (MSMg01no091_i15.g1)
ACCAG309462AG309463
length688688
length of high quality
(start - end)
454 (44 - 497)288 (75 - 362)
definitionCHROMAT_FILE: MSMg01no091_i15.b1 PHD_FILE: MSMg01no091_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:05 2005CHROMAT_FILE: MSMg01no091_i15.g1 PHD_FILE: MSMg01no091_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:05 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(170,112,960 - 170,113,409)(170,181,706 - 170,181,992)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACCGTGTGCACCGGACGAGAAAAGTCCCGATCCACCGGGACCCAGAG
TACGTTTCTCAATTCGGTTACCATCTGAAAAGAGAGCCAAGGTCTCGTTG
GCGAGTGTCGCCAAGTACTCCCCCTTCCCTTCCCTGTGGCCACAGAAAGG
TCTGGTGGGGGTGGACAGGGCAGTGTGGCCAGCCTGTTGCCATGGAGGCG
GCTTAATCTGAAGACAGTCGAATTCAAAGCTCACAGTAGAAAGGATGGGA
TAGCATTGAAATGGTGACCGTTTACTTAGAAGAATGCCCAAGCTGTAGCG
CACAGAGATAAGCTGCGGCAGACATCTCTCCAGCCGGCCGAAGCAGCCAA
ACCGGTTGGGCAACTTTCTTTCTTTTCTTTTTCCTTTTTCTGTTGGATCA
GGCCAGTACTGAATAGCAACTAGCAACCTGGGACTGTAGGGAAAAAAAGA
GAACCCTCCCACCCCCGCTTCCCAAGTTCTCCTGGGCAGAAAGCACAGTT
TAAAAAACAGATGTGTGTGCGTGTGTGTGTGTGTGTGTGTGTGCTTAACA
ACTCCTTTGACTTTTGCTGACACGTTCTCTGCCTCTTGTTCCTTTTTTGC
AAACATTGCACATTTTCATATTTAATCACTTTTTTCAC
CCGATGTAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXAGCAGACTCTGATGACACAGCCCCAG
CTCTCCGAGTGACCCCTTTCCCTCCCTGTCTGTATCCTAAATATCAAGGA
TAAATGAGGGGGGTTCACCGTCGTCATTGTCATCGTCGTCGTGCGTGCAC
CTGTGCACCGTTGCTGTGGTTACTGAAAGGATACTGTCTGTTTGTTGTTG
TATTCAGTGAGATCGAGCGAAGGGATCCCCCGCTCGGAAGAAAGTAACGT
GAAAGACTCCAGCTGCCAAGTAAGTGACCGTGAACTCAGCCTGCGGGCAG
GTTCAGCCTCGTGACCTGGAAGTTCATATCCACTTGTGAAACATTGCCTG
GTTAAGCACCCACTGTATACCCAGCAGTATTGGGCTCTACAGACATGGTA
TGGGGCGAGTCCTCAGCGCTTCTCTCTCCATGTAGAAAGTTTCTTCCCAG
ACTTCCAGTGTTAGCAGAAATATCACCTCCTCAAAGAGCTCCTGTGCCCT
GCGGTCATCCCTGTCATAGAGTTTGCTCCCTTCTCGGGGCTGTAACAATT
CTCATGTCTCTCCTGATCCTTCCCATCCATGTCTGGAACATTGTAAAGCA
AGCAGGGTGCTTCTAGGTTTCTCTCATCTTCTGTGGTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_i15.b1 MSMg01no091_i15.b1 CHROMAT_FILE:
MSMg01no091_i15.b1 PHD_FILE: MSMg01no091_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:05 2005
         (454 letters)



>mm_chr2_170112756_170113609
          Length = 854

 Score =  824 bits (426), Expect = 0.0
 Identities = 444/450 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaccgtgtgcaccggacgagaaaagtcccgatccaccgggacccagagtacgttt 64
           ||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccgtgtgcaggggacgagaaaagtcccgatccaccgggacccagagtacgttt 264

                                                                       
Query: 65  ctcaattcggttaccatctgaaaagagagccaaggtctcgttggcgagtgtcgccaagta 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ctcaattcggttacgatctgaaaagagagccaaggtctcgttggcgagtgtcgccaagta 324

                                                                       
Query: 125 ctcccccttcccttccctgtggccacagaaaggtctggtgggggtggacagggcagtgtg 184
           |||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ctcccccgccccttccctgtggccacagaaaggtctggtgggggtggacagggcagtgtg 384

                                                                       
Query: 185 gccagcctgttgccatggaggcggcttaatctgaagacagtcgaattcaaagctcacagt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gccagcctgttgccatggaggcggcttaatctgaagacagtcgaattcaaagctcacagt 444

                                                                       
Query: 245 agaaaggatgggatagcattgaaatggtgaccgtttacttagaagaatgcccaagctgta 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 agaaaggatgggatagcattgaaatggtgaccgtttacttagaagaatgcccaagctgta 504

                                                                       
Query: 305 gcgcacagagataagctgcggcagacatctctccagccggccgaagcagccaaaccggtt 364
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 505 gcgcacagagataagctgcggctgacatctctccagccggccgaagcagccaaaccggtt 564

                                                                       
Query: 365 gggcaactttctttcttttctttttcctttttctgttggatcaggccagtactgaatagc 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gggcaactttctttcttttctttttcctttttctgttggatcaggccagtactgaatagc 624

                                         
Query: 425 aactagcaacctgggactgtagggaaaaaa 454
           ||||||||||||||||||||||||||||||
Sbjct: 625 aactagcaacctgggactgtagggaaaaaa 654


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 454
Length of database: 854
Length adjustment: 10
Effective length of query: 444
Effective length of database: 844
Effective search space:   374736
Effective search space used:   374736
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no091_i15.g1 MSMg01no091_i15.g1 CHROMAT_FILE:
MSMg01no091_i15.g1 PHD_FILE: MSMg01no091_i15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:05 2005
         (288 letters)



>mm_chr2_170181506_170182193
          Length = 688

 Score =  532 bits (275), Expect = e-155
 Identities = 284/287 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcagactctgatgacacagccccagctctccgagtgacccctttccctccctgtctgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct: 487 agcagactctgatgacacagccccagctctccgagtgacccctttccattcctgtctgta 428

                                                                       
Query: 61  tcctaaatatcaaggataaatgaggggggttcaccgtcgtcattgtcatcgtcgtcgtgc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 tcctaaatatcaaggataaatgaggggggttcaccgtcgtcattgtcatcgtcgtcgtgc 368

                                                                       
Query: 121 gtgcacctgtgcaccgttgctgtggttactgaaaggatactgtctgtttgttgttgtatt 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 367 gtgcacctgtgcaccgttgctgtggttactgaaaggatactgtctgtttgttgttgtagt 308

                                                                       
Query: 181 cagtgagatcgagcgaagggatcccccgctcggaagaaagtaacgtgaaagactccagct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 cagtgagatcgagcgaagggatcccccgctcggaagaaagtaacgtgaaagactccagct 248

                                                          
Query: 241 gccaagtaagtgaccgtgaactcagcctgcgggcaggttcagcctcg 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 gccaagtaagtgaccgtgaactcagcctgcgggcaggttcagcctcg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)