BAC Information

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BAC

Clone NameMSMg01-091L19
Chromosome2 (Build37)
Map Location 93,981,672 - 93,982,226
singlet/doubletsinglet
Overlap geneHsd17b12
Upstream geneTrp53i11, C230071H18Rik, Tspan18, LOC100042789, LOC639658, Cd82, Alx4, Ext2, 2610203E10Rik, Gm1967, Gm1335, LOC620695, Alkbh3
Downstream geneE530001K10Rik, Ttc17, Itpa-ps1, Api5, LOC100043259
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-091L19.T7 (MSMg01no091_l19.b1)MSMg01-091L19.TJ (MSMg01no091_l19.g1)
ACCAG309608AG309609
length713742
length of high quality
(start - end)
561 (38 - 598)45 (74 - 118)
definitionCHROMAT_FILE: MSMg01no091_l19.b1 PHD_FILE: MSMg01no091_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:21 2005CHROMAT_FILE: MSMg01no091_l19.g1 PHD_FILE: MSMg01no091_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTCC
AGCACTCTCGCCTCCGCCTTGCTGGGAATCAAGTGTTCAGGAATAGGCTG
CTCAGAGATGGAGAGGGCTCAACAGTTAAGGGAACTGGCTGCTCTTCCTG
AGGACCTAAGTTCAGTTCTCTGCACTCAAATGGAGGTTCACTGTAATTTC
AGTCTCAAGAGATCTGATGTTCTCTTTTGACCCCCTTAGTCACCAGTAAC
GTGTGTGGTGCACAAACAAACATGCAGGCAAAACATCCATATAAATCAAA
ATAAAATAATTTTTAAAAAGAATAAGCTGCTCAAATAAAACCAGAAGAGA
CAGTCAAGGCTATAGATACATAAACCACAACACAGAAGTCCAAGAAACCT
GAAAAGGAAATGCAATTAATGGGAGTCCTTCAAAACCTCATATTCTGAAC
TCAGTTACTGAACTCAAAAATACTAAATCAGAGAAAATGCCAGATGAGTA
TTGCAAAAGTTAACTGGTAAAAATTATCAGCAACCTGAAAGGAGATCTCA
GCAGTTAAGCATGTGCTCTTCCAGAGGACCAAAATTCAACTCACATCAGG
TGGTTCACAACCACCTCTAACTCTAGCTTCCCTCTTGGCCTCCATGGCAC
TGGACAAATGTTCATTCAGACACATTCATATACTTAATTTTAAAATAAAG
AGTACTCTAACTA
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTGTCTAAAGCTGAGCTTTAAATTTTT
CATTACTGTAAATAATTTTTCTCCAAGAAAGGAGTTTGAATAGCACTATG
ACTCTTTTATGTCTTACTATTACTTTTAGAAATATTTCACATGCATTGCT
TATCTTTTTTACTTTTAAAATAGGTAGCAATTTGATTTTTTACACTCTCA
ATAGTTGTTTTAAAATTTTTGACTTTGTGATTTTCTACTACAATATACCC
ATTTACCTTTACAGCTCTATATTTTTTATACCGCTTTACGTCCCCTCTTC
TAACATACTTAAAATGATTCCCCCCCCCCCCCCCCTTACAATTGATATTC
ATCACCTCTCTTTATCCCCCCCACAAACCCATTCAAAAACGGCGGGTTGC
TGGGGGACTCTTCCAACCCCCTCTCCCCCCGTACTGTTATCCTATACTCC
CCTCCTACCACGCTTACAATTTCCCCCCTTACCTCCCACTTCCTTTTCTT
CTCTTTCCCTTATTTCCACCTCTGCATCCCCCTTTCTTACTCCACTCTTT
TCCCCTTTCCCCCATTTCCCTAATTTTTCCTCCACTTCTTATTCTCTTTT
TTCTTATTACCCTTATCCCTTTTTTTTCCCTCCCCCTCGTCCCATTTTCT
TTCCCACCTGCCTTTCCCGTCTTCTCTCCTTCCTCCCCCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no091_l19.b1 MSMg01no091_l19.b1 CHROMAT_FILE:
MSMg01no091_l19.b1 PHD_FILE: MSMg01no091_l19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:21 2005
         (561 letters)



>mm_chr2_93981466_93982426
          Length = 961

 Score = 1036 bits (536), Expect = 0.0
 Identities = 551/556 (99%), Gaps = 2/556 (0%)
 Strand = Plus / Plus

                                                                       
Query: 7   gaattcc-agcactctcgcctccgccttgctgggaatcaagtgttcaggaataggctgct 65
           ||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattccaagcactct-gcctccgccttgctgggaatcaagtgttcaggaataggctgct 265

                                                                       
Query: 66  cagagatggagagggctcaacagttaagggaactggctgctcttcctgaggacctaagtt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 cagagatggagagggctcaacagttaagggaactggctgctcttcctgaggacctaagtt 325

                                                                       
Query: 126 cagttctctgcactcaaatggaggttcactgtaatttcagtctcaagagatctgatgttc 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 cagttctctgcactcaaatggaggttcactgtaatttcagtctcaagagatctgatgttc 385

                                                                       
Query: 186 tcttttgacccccttagtcaccagtaacgtgtgtggtgcacaaacaaacatgcaggcaaa 245
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 tcttctgacccccttagtcaccagtaacgtgtgtggtgcacaaacaaacatgcaggcaaa 445

                                                                       
Query: 246 acatccatataaatcaaaataaaataatttttaaaaagaataagctgctcaaataaaacc 305
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 acatccatataaatcaaaataaaataatttttaaaaagaataagctgctcaaataaaacc 505

                                                                       
Query: 306 agaagagacagtcaaggctatagatacataaaccacaacacagaagtccaagaaacctga 365
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 506 agaagagacagtcaaggctatagatacataaaccacaacacagaagtccaagaaacctga 565

                                                                       
Query: 366 aaaggaaatgcaattaatgggagtccttcaaaacctcatattctgaactcagttactgaa 425
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 566 aaaggaaatgtaattaatgggagtccttcaaaacctcatattctgaactcagttactgaa 625

                                                                       
Query: 426 ctcaaaaatactaaatcagagaaaatgccagatgagtattgcaaaagttaactggtaaaa 485
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 626 ctcaaaaatacttaatcagagaaaatgccagatgagtattgcaaaagttaactggtaaaa 685

                                                                       
Query: 486 attatcagcaacctgaaaggagatctcagcagttaagcatgtgctcttccagaggaccaa 545
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 686 attatcagcaacctgaaaggagatctcagcagttaagcatgtgctcttccagaggaccaa 745

                           
Query: 546 aattcaactcacatca 561
           ||||||||||||||||
Sbjct: 746 aattcaactcacatca 761


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 561
Length of database: 961
Length adjustment: 10
Effective length of query: 551
Effective length of database: 951
Effective search space:   524001
Effective search space used:   524001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)