BAC Information

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BAC

Clone NameMSMg01-092B01
Chromosome2 (Build37)
Map Location 132,648,882 - 132,649,054
singlet/doubletsinglet
Overlap geneMcm8
Upstream geneLamr1-ps1, Prnp, Prnd, Rassf2, Slc23a2, LOC626513, LOC100043470, EG329521, 5730494N06Rik, Pcna, Cds2, Prokr2, 1700026D11Rik, Prei4, LOC100043781, LOC383801, LOC668906, Chgb, 3300001M20Rik
Downstream geneCrls1, B430119L13Rik, 5830467P10Rik, LOC668908, LOC100043785, A430048G15Rik, Bmp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092B01.T7 (MSMg01no092_b01.b1)MSMg01-092B01.TJ (MSMg01no092_b01.g1)
ACCAG309844AG309845
length731741
length of high quality
(start - end)
392 (44 - 435)173 (129 - 301)
definitionCHROMAT_FILE: MSMg01no092_b01.b1 PHD_FILE: MSMg01no092_b01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:47 2005CHROMAT_FILE: MSMg01no092_b01.g1 PHD_FILE: MSMg01no092_b01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:45:47 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGA
ATTCTCCGAAAATACCGCAAATCAGGTTGTCCCCTGAGAGGGGAGAACGC
ATTCCCTTGGAGAAGCTTTCCAGCTAAGTGTCCACATCTTCTACTACCAT
CCACATCTTACTAAATCGTAAATTACATGCTTACATTTTTTTTTATTCTG
TGGGAATGTGCATGTGTGCACAAGTTCATGCCACAGTGCGCATGTGCAGG
TCAGAGGACAACTTCCCTTAGAGAGTGTCTTCCTTTCACCACGTAGATTC
CTGGAGTCAAATTCAGGTCTCAGGACTTGGCAGCAAGTGCCTTTATCTGC
TAAGCCATCTTGCCAGCCCATAAAGTACATTTTAATGCAAATATTTGTCT
AATAAAAAACATTGATGCCTATGTTTAAAATACAGGACAAGAATTTGTTT
GAACCATTAACAGTGATAATGCCTGTAATCCCAGTATTTTTTGGGATACT
CAGGCACAAGGTTTTATGAGCTCCTAGGCCAGCATATTGTTTACAGATGT
TTTTCAATAATAATGTGTTGTCAGTGAAATTGAAAGTTGTGACGGCTTAC
TCCCTGACAAGTTCTCGACGCGTTCCGAAAATTTCTCCTCCTAGTGGGTG
TTTCTCTACAATCTCACCACCTTCCTTCCATCCCAATGGAAAAATTTTCC
TCAATTTTAACCCTACTCTACGACGGCTTTG
ATGAAGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTGTGGCTGCGCCTAAGAGGAACTTGTGAAA
ATATAACTCTATATATTGTCCCGCTTATGGAGAGACACATTCTTGTTTTA
TTTTTAGAGTGTACAACTATGAGCCCTTGACACACCTCAAGAATATCCGA
GCAACTTGCTATGGGAAATACATCTCTATACGAGGGACTGTGGTCCGGGT
CAGCAACATAAAGCCTCTTTGCACCAACATGGCTTTTCAGCGCGCTGCAT
GTGGAGAGATTCAGAGCTTTCCTCTGCCAGATGGAAAATACACCCTTCTC
TACTAGGTGATATGTTCTTTATTCGACTGCCTTCTTTAATTCTTGTCTTC
TTTACCGAGGAGGTACATCTGTTCTACATAAAGATTTGCCCGCGCTTTTT
GACCTTAACTGTTCCCCAACCCACGCCTGTACTCTTCTTGCTCACTCTCC
CTATTATTTCTTTCTCTTTTTGCGTTTGCCTGGTTTACCAAAGCTGTATT
AAACCCCTTACTGGTGCGCTATTTACTCTCTGCGACCACCGCGAAATTTC
TCATTATTTATATGGTAATTTGTTATCTATCGCATTCACCCTTTCTCCCC
TCAACAGCTTTTCCTCCTCGCCTTCCCCCATCCCCCTTTGTCATCCTCAC
CCCCCCTTATCCCTAATCACCGGTCTTATGCCTTCCCGCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_b01.g1 MSMg01no092_b01.g1 CHROMAT_FILE:
MSMg01no092_b01.g1 PHD_FILE: MSMg01no092_b01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:45:47 2005
         (173 letters)



>mm_chr2_132648682_132649254
          Length = 573

 Score =  327 bits (169), Expect = 2e-94
 Identities = 172/173 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ggagagacacattcttgttttatttttagagtgtacaactatgagcccttgacacacctc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ggagagacacattcttgttttatttttagagtgtacaactatgagcccttgacacacctc 260

                                                                       
Query: 61  aagaatatccgagcaacttgctatgggaaatacatctctatacgagggactgtggtccgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aagaatatccgagcaacttgctatgggaaatacatctctatacgagggactgtggtccgg 320

                                                                
Query: 121 gtcagcaacataaagcctctttgcaccaacatggcttttcagcgcgctgcatg 173
           |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 321 gtcagcaacataaagcctctttgcaccaacatggcttttcagtgcgctgcatg 373


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 173
Length of database: 573
Length adjustment: 8
Effective length of query: 165
Effective length of database: 565
Effective search space:    93225
Effective search space used:    93225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)