BAC Information

Click to search

BAC

Clone NameMSMg01-092F20
Chromosome2 (Build37)
Map Location 53,539,165 - 53,539,744
singlet/doubletsinglet
Overlap genenone
Upstream geneStam2, Fmnl2, Prpf40a, Arl6ip6, LOC666872, LOC666876
Downstream geneLOC207933, Rprm, LOC666913, LOC626563, LOC100041792, LOC100042878, Galnt13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092F20.T7 (MSMg01no092_f20.b1)MSMg01-092F20.TJ (MSMg01no092_f20.g1)
ACCAG310070AG310071
length675677
length of high quality
(start - end)
574 (44 - 617)584 (74 - 657)
definitionCHROMAT_FILE: MSMg01no092_f20.b1 PHD_FILE: MSMg01no092_f20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:12 2005CHROMAT_FILE: MSMg01no092_f20.g1 PHD_FILE: MSMg01no092_f20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATTGTTTTCCATAGCTGAGTATACTCCATTATGAAAACTACCATATA
TTTTTTATCCATTCCTCTGTTGAGGGACATCTCGGTTCTTTCCAGCTTCT
GGCTATTATAAATAAGGCTGCTGTGAACATAGTGAAGCATGTGTCCTTAT
TACATGTTGGAACATCTTCAGAGTATTTGTCCAGGACTGATATAGCTGTG
TCTTCAGGTAGCACTATGTCCAATTTTCTGAGGAACCACCAAACTTATTT
CCAGAGTGGTTGTACCAGCTTGCAATCCCACCAACAATGGAGGAGTGTTC
CTCTTTTTCCACATCCTTGCCAGCATCTGCTGTCACCTGAGATTTTGATC
TTAGGCATTTTGACTGGTGTGAGGTGGAATCTCAGAATGGTTTTGATTTG
CATTTCCCTGATGACTAAGGATGTTGAACATTTCTTTATGTGCTTCTCAG
CCATTTGATATTCTTCAGTTAAAAATTCTTTGTTCAGCTCTGTACCCCAT
TTTAAATAGGGTTATTTGGTTCTCTGGAGTCTAACTTCTTGAGTTCTTTG
TATATACCTGATATTAGCCTTCGATCAAATATAGGATGGTAAAGATCATT
TTCCCAATGACTTGGCAGCCATTTC
CAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAATCCCCAAGACTCAAGTGATGAAAAA
TGGTTTTATGATTTTTATGTGCACATGCATATATGCTATAACACATGTAT
ACACACACACATACTCAGAGAGATGGGGGGGGGAATAAGAATGAAAAAAG
AAGTATTTGATTGTTGTTGGGCTATGATTCCCAAAATGCTGATTCCATTT
TATTGTTGTTGCTGTATTACTGACATCTGCTCAGCAATCCCCAAGTGATC
CAGATTAACACTCAGGGATGCATAGGAACCACTGTCCTCCACTAACTTCT
TACTTTCCTTTCCTCCCTTTACCCCCTTCCCTCTTCCTTACTTCCTTCTC
CTTTTTTCCAGTCTTCCTTGGTATACTCTGGGTACATTGGCTTCCTGACT
CTTGCTCAAACACCCTAGCTGCAAGCTCTGAGTCAGCTGATGCTCTTTCC
AAGCGTTCAGATGGAATACTGTGAGACTCTTTAAAATGTCAAGTACCTTT
GCATAAAGATTCCTGGAAAATGATGCGGGGCAGGGCCTTGATTAGCCTCT
TGTCTTTTTTTTTTTCTTTCCTGAATCACACTTTTTCAGATTGACCAGAT
TGCATTTCTCTCACTAAAATAACACGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_f20.g1 MSMg01no092_f20.g1 CHROMAT_FILE:
MSMg01no092_f20.g1 PHD_FILE: MSMg01no092_f20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:12 2005
         (584 letters)



>mm_chr2_53538965_53539944
          Length = 980

 Score = 1065 bits (551), Expect = 0.0
 Identities = 575/585 (98%), Gaps = 6/585 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aatccccaagactcaagtgatgaaaaatggttttatgatttttatgtgcacatgcatata 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aatccccaagactcaagtgatgaaaaatggttttatgatttttatgtgcacatgcatata 260

                                                                       
Query: 61  tgctataacacatgtatacacacacacatactcagagagatgggggggggaataagaatg 120
           |||||||||||||||||||||||||||||||||||||    |||||| ||||||||||||
Sbjct: 261 tgctataacacatgtatacacacacacatactcagag----ggggggcggaataagaatg 316

                                                                       
Query: 121 aaaaaagaagtatttgattgttgttgggctatgattcccaaaatgctgattccattttat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aaaaaagaagtatttgattgttgttgggctatgattcccaaaatgctgattccattttat 376

                                                                       
Query: 181 tgttgttgctgtattactgacatctgctcagcaatccccaagtgatccagattaacactc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgttgttgctgtattactgacatctgctcagcaatccccaagtgatccagattaacactc 436

                                                                       
Query: 241 agggatgcataggaaccactgtcctccactaacttcttactttcctttcctccctttacc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 agggatgcataggaaccactgtcctccactaacttcttactttcctttcctccctttacc 496

                                                                       
Query: 301 cccttccctcttccttacttccttctccttttttccagtcttccttggtatactctgggt 360
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 497 cccttccctcttccttacttccttctccttttttccagacttccttggtatactctgggt 556

                                                                       
Query: 361 acattggcttcctgactcttgctcaaacaccctagctgcaagctctgagtcagctgatgc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 acattggcttcctgactcttgctcaaacaccctagctgcaagctctgagtcagctgatgc 616

                                                                       
Query: 421 tctttccaagcgttcagatggaatactgtgagactctttaaaatgtcaagtacctttgca 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 617 tctttccaagcgttcagatggaatactgtgagactctttaaaatgtcaagtacctttgca 676

                                                                       
Query: 481 taaagattcctggaaaatgatgcggggcagggccttgattagcctcttgtcttttttttt 540
           ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 677 taaggattcctggaaaatgatgaggggcagggccttgattagcctcttgtcttttttttt 736

                                                        
Query: 541 ttctttcctgaatcacactttttca-gattgaccagattgcattt 584
           |||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 737 ttctttcctgaatcacactttt-caagattgaccagattgcattt 780


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 584
Length of database: 980
Length adjustment: 10
Effective length of query: 574
Effective length of database: 970
Effective search space:   556780
Effective search space used:   556780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)