BAC Information

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BAC

Clone NameMSMg01-092H19
Chromosome2 (Build37)
Map Location 51,770,768 - 51,898,197
singlet/doubletdoublet
Overlap geneRbm43, LOC100041634, Nmi, Tnfaip6
Upstream geneRnd3, LOC666802, LOC666810, LOC100041614, Tas2r134, LOC433426, Ppia-ps2_635.1
Downstream geneRif1, Neb, LOC100041670, Arl5a, Cacnb4, OTTMUSG00000012638, Stam2, Fmnl2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092H19.T7 (MSMg01no092_h19.b1)MSMg01-092H19.TJ (MSMg01no092_h19.g1)
ACCAG310164AG310165
length693689
length of high quality
(start - end)
292 (136 - 427)169 (196 - 364)
definitionCHROMAT_FILE: MSMg01no092_h19.b1 PHD_FILE: MSMg01no092_h19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:21 2005CHROMAT_FILE: MSMg01no092_h19.g1 PHD_FILE: MSMg01no092_h19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(51,770,768 - 51,771,057)(51,898,029 - 51,898,197)
sequence
NNAACCTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGC
GGAATTCCTCACATTGCGTCTGGCGCCCTCTAGTGCTTTATCAGATTGTA
ACTGCTTCTGAGTCTTATTCCACCCTTGAAACAGAAAAGCCAATCCTGGA
GAAACTAGTTCCCACTCAAGGACAGCCCAGCTAAGTCACCTACAACACAC
TCCTGAGCAGCGAGTCTCTTTAATATTGAGAGATTACACTGAAATCCAAG
TTAAGAGTCAGAAGCTAACAGTTTACCCATTCATTTGAGTCCTCAGATTA
CTAATGAGGATGTCACAGTCCATCACTCACAGTGACATCACCATTGTTTG
TGCTGGAATTTCTGGCCACTGGTCCCCAGCACTTCCATTGTGCCAACATC
TCATGCTTCACACTGCTGCTCCTTGATGACATTCATGACCACATTCAGGT
CGGCCTGGGGAAGGTAAAGAAGGCCTACTCTAAGGTAATGAACAGTTCCT
GGCTTTTGTCATGGCTCACCAAAAGAATAGAGTTGAGGTGACATAACAGA
AAATCATATAAATGCCTTTTAAAAATTCTCAAGGTTAGGATCCCTGACCC
GAAGACCGGACAAAAGAAGTATATCCTGTCCTGGAAACGATGTATTTTAC
ATGAGATGTTATAATTAATCTATTTTTACAGTATTCATCGATT
AACAATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTGAATGCCTCAGCACATAAGACACA
GATCCAGAAACATGTTCTGACCCAACTCATATTTTTTTTTTCTTTTCTTT
TCCTCAAACTAATGCCGACTCTGCCACAGCGTGACGGTAAATGCTGCTGG
CTGTGTTTCATGCTTTTCTAGACTCCAAGGATCCAGCTTTCCTAAATTAG
ATGGTAAAAGCCCATTGCTTATAGAAGACAACAGTCAATTGACTATTTTT
ATTCACTCGCTTATTTTGAAGCAGGGTCTCCTGTGCCAGGCTGGCCCCTA
ACTGGCTTTGTAGCTGACCAAGTCCTTGAGCTCTGTGATGCTTGTCTTAT
CTCCTGACAGCTGGCCTCACAGGCATAACACTTACCTTTATTATGCACTG
GGCAACCTGAGCAGATTTTTTATGCATGTTAGACAAGCTCTACCAACTGA
ACTTACATTCCATGCTTACGGACCAAAACATGCTATCATCTCCAGTTTAT
CACCAGTGGAGACCATTTCCGCCTTGATAATGATTCGAGCCCCAGGCTTC
TTCCTGATGCACACTCTCTATCCGGGCATCAATTTCCTCACTCACTGAAA
CCTGACACTTGATGAAATGCTCCAAATATTGTGTACCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_h19.b1 MSMg01no092_h19.b1 CHROMAT_FILE:
MSMg01no092_h19.b1 PHD_FILE: MSMg01no092_h19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:21 2005
         (292 letters)



>mm_chr2_51770568_51771259
          Length = 692

 Score =  553 bits (286), Expect = e-162
 Identities = 289/290 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaagccaatcctggagaaactagttcccactcaaggacagcccagctaagtcacctacaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaagccaatcctggagaaactagttcccactcaaggacagcccagctaagtcacctacaa 260

                                                                       
Query: 61  cacactcctgagcagcgagtctctttaatattgagagattacactgaaatccaagttaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacactcctgagcagcgagtctctttaatattgagagattacactgaaatccaagttaag 320

                                                                       
Query: 121 agtcagaagctaacagtttacccattcatttgagtcctcagattactaatgaggatgtca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agtcagaagctaacagtttacccattcatttgagtcctcagattactaatgaggatgtca 380

                                                                       
Query: 181 cagtccatcactcacagtgacatcaccattgtttgtgctggaatttctggccactggtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtccatcactcacagtgacatcaccattgtttgtgctggaatttctggccactggtcc 440

                                                             
Query: 241 ccagcacttccattgtgccaacatctcatgcttcacactgctgctccttg 290
           | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ctagcacttccattgtgccaacatctcatgcttcacactgctgctccttg 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no092_h19.g1 MSMg01no092_h19.g1 CHROMAT_FILE:
MSMg01no092_h19.g1 PHD_FILE: MSMg01no092_h19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:21 2005
         (169 letters)



>mm_chr2_51897883_51898451
          Length = 569

 Score =  319 bits (165), Expect = 5e-92
 Identities = 168/169 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gctggctgtgtttcatgcttttctagactccaaggatccagctttcctaaattagatggt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 gctggctgtgtttcatgcttttctagactccaaggatccagctttcctaaattagatggt 256

                                                                       
Query: 61  aaaagcccattgcttatagaagacaacagtcaattgactatttttattcactcgcttatt 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 aaaagcccattgcttagagaagacaacagtcaattgactatttttattcactcgcttatt 196

                                                            
Query: 121 ttgaagcagggtctcctgtgccaggctggcccctaactggctttgtagc 169
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 195 ttgaagcagggtctcctgtgccaggctggcccctaactggctttgtagc 147


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 169
Length of database: 569
Length adjustment: 8
Effective length of query: 161
Effective length of database: 561
Effective search space:    90321
Effective search space used:    90321
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)