BAC Information

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BAC

Clone NameMSMg01-092I07
Chromosome2 (Build37)
Map Location 46,577,376 - 46,577,521
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041337, LOC666604, LOC383690
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092I07.T7 (MSMg01no092_i07.b1)MSMg01-092I07.TJ (MSMg01no092_i07.g1)
ACCAG310187AG310188
length8181,032
length of high quality
(start - end)
146 (185 - 330)---
definitionCHROMAT_FILE: MSMg01no092_i07.b1 PHD_FILE: MSMg01no092_i07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:24 2005CHROMAT_FILE: MSMg01no092_i07.g1 PHD_FILE: MSMg01no092_i07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:24 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTTTTTTTTCTTNNNTTTCTTTTTTTTTCTTTTCCTTCTTTCTCTTCGCT
NCNNTACTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCGCGGAATTCTTCAAGTCTTGTGTCTGGAGTGCATGGTATCTTCAGCAA
TAGGTTCTTAGGAATCTGTTAAGTGTCCATCGAATTTGTTTAATTTCTGG
AAGTTATATTATTATTGGATTCAAGCTTTATTACATTGAGGTGTCCTATT
GGGTACATACAATTATTTAAACTTTCTGTATTTGATATGGAGCTCATTTC
ATGCATTCTATTCTATAGAAACTTTCATGAGATGTTGTATAGAATGTGTA
TTGTTTCATATATGTGCGAAAATTTTAATAGATATCTATTTGTTAGGTCT
ATTTGATATATAATATTTTGTTATTCTACTTTCCTTGCATTTTTGTTATA
TTTTAGTTCCATATGGTATACCCGCCTGGATAAAGTAGGGCGCTTGAATT
CATCTACTACTGCTTACTTATGATCTATTCCCGTCCTTGAATTTATTCAT
CAATATTTTATATAACTTATATTTTATTAATTTTTCCATACCCTTGTTTT
AAGACTCGTACTGTTTGTTTTGCCTCCTCTTTGCCTGACATGACGTTATA
TTTTTTATCTTTCTCAAATACGTTCTGTCTTTTGCGATTCTTTTTCCCAT
TGACTGGCTTGCAACCTCACACTTGTTTAATTGTTCTATCCATTTTTTCT
ACTGTTTAACGCCCCTTAAGTCCATGGATCGTCTGGCTTTTGGTCCGTCT
TCTTCTTAAAGTTCTTTT
CTTTTTCCCTCCNNCCCCCTCTTTTTTTCTTTCCTCTTTTCTCCTTNCTT
ATAATNTATCTACTATTGATATGACTAGGTCTGCTGGCCGCCTGCTTCGT
CAACATTTACGCGATACTATAGAAACGATCCGCGCCAATTTCCAGCAAAT
GACTATTGCCGGTATCAAGACTTCGCTGACACTTTGTTAACTTGCCCCTG
AATTTTAGGTAAACTTATCTTCCAATGCTCGTATATACCACATTAATTGT
GTTCCTCTGAACAAATACAGAATCACGTTACCTTATACANCAGCAGTCTC
CTATTCTAGATTCCCCACTTACCCGTTTCTCTTACTCACTTTACGCAGGT
ATTACGAAGCTTTCTTCTCCAAATATCGCCATATCTGCAATCTCGATCAC
TATACATATAGCTCACACTCCTACCGACACGTTTATCCCTTGTTTTACCC
CAACTACTTTGCTATTCTTGTACATAAAGTTTTGCTCGTTTTTTTTTTTT
CCTCCTCTCCCCCCCTCTCATTTACATTGTATCCAACCTAATCCCGTCTC
CTATTTTCCCCCCCCCCCCCACCTTATAAACAACAAACATCCATTTTTTC
CCCGCGTTAGCCGCCCACCCACCCTTATTTTTTCCTTTTCAATCCCTCCA
TACTTTTCCAACCAATACTTATACCACACTTAACTCAAATAAATATACCC
CTACTTAACACTCCCGTCCTCCTAATATTTCTTTATCTCCCCCCTCCATT
CCGCANATCCCTCTTAAGGCCCATATCCTATAACCTCCTGGCTCTTAATT
ACCCTTACTAGTATATATCAACCCTCATAAGATAATTATATTTATACCCA
CACTATTACCAATCCCTCTTATAACATACCCCAATAACTATACACAATAT
GTCACCCACACCCACCATACATGTATCCCACTCTCCCGCCCCCATAATAC
ATACGATTTAACACCACATCTTGTCCCCCCTCCTTTTCTTTACTCTCACA
TCCACACTAATCCACCCTTCTTTCACCACCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_i07.b1 MSMg01no092_i07.b1 CHROMAT_FILE:
MSMg01no092_i07.b1 PHD_FILE: MSMg01no092_i07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:24 2005
         (146 letters)



>mm_chr2_46577176_46577721
          Length = 546

 Score =  267 bits (138), Expect = 2e-76
 Identities = 144/146 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tttgtttaatttctggaagttatattattattggattcaagctttattacattgaggtgt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tttgtttaatttctggaagttatattattattggattcaagctttattacattgaggtgt 260

                                                                       
Query: 61  cctattgggtacatacaattatttaaactttctgtatttgatatggagctcatttcatgc 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| 
Sbjct: 261 cctattgggtacatacaattatttaaactttctgtatttgatatggagcttatttcatgt 320

                                     
Query: 121 attctattctatagaaactttcatga 146
           ||||||||||||||||||||||||||
Sbjct: 321 attctattctatagaaactttcatga 346


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 146
Length of database: 546
Length adjustment: 8
Effective length of query: 138
Effective length of database: 538
Effective search space:    74244
Effective search space used:    74244
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)