BAC Information

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BAC

Clone NameMSMg01-092O21
Chromosome2 (Build37)
Map Location 41,536,337 - 41,536,699
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneLOC100042629
Downstream geneLOC625094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092O21.T7 (MSMg01no092_o21.b1)MSMg01-092O21.TJ (MSMg01no092_o21.g1)
ACCAG310499AG310500
length753861
length of high quality
(start - end)
367 (34 - 400)47 (125 - 171)
definitionCHROMAT_FILE: MSMg01no092_o21.b1 PHD_FILE: MSMg01no092_o21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:57 2005CHROMAT_FILE: MSMg01no092_o21.g1 PHD_FILE: MSMg01no092_o21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCGGCCGCTATACGACTCCTATAGTCAGAGGATCCGCGGAATTCCATTTG
TAAGTATTCGGTTTATGGAACTTTCCAGATTCCATATCCATTGTTGGCAC
CACAAATGGTCTTCTATTTTGACTAATGTATCAAATTAATAAAATTCCTC
CAGCATTGTTTGATAGAGCAATCCCCGTTTTAAAATGATTGAGAACAAAA
GAAAATCTTTACTAGAAAACTCATGAAAAGATGTTAATATAGCATGTGAA
TGACCCTGTGGACCATTGCCAAATTGACTTATCTGAAAGCAAATGTATTC
TCCTGGGAAAGAAAAGTTGATTCATTATTTTAAATTGAATAATAAGCACT
AATCTTAATAATTTTAACTTATAGATTGATAATTCAGAAATAGTTTCCAC
CAGGCAGGAAAACTTAAATTTCATAATGTATCATCTTTGATGGGTATTCA
TTATGTATCTTGTGGTTTGAATAACAGTGACTCCCATAGGTTCATATATT
TGAGTGTTACGTATCAGAGGTTGACACTAATTAGTGGGATTAAGAATTGT
GTCTTTTTGAGCTTCAACACTGAGCCTCTGCCCATGGTCCAGTAAATAAA
CTTTCATGTGTTCTTAAAAGAACATGTGAAAGAGTGTGTTCACTGACCTT
GGAAAACATTCCTCTCCCCTGAAAGGATTTCCTTTAATTATTCCTTAAAA
ACTTTTTCTAATCTTTACACACATTCTGCCTCCTATTTAAAAACCTTCCC
ACT
CTTTTTCTTCTTTTCCTCTNNNNNNNNNCCNNNNNAATCTAANNNNTCAT
CGCAGATATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTATTTCTTATGAGAATCCTTTCTTGC
TTTCAACAACCCACGAAGCAGACTTTTCCCCTATAAAAAGCTGCTCTTGG
GATAAAGTTAGGCCCGGTATGCTTTTGGTTATATTCTCAGTCCTTCCAAT
TAACATACATATTCCAAAACTCAGAATTCTCATTCACAGCACCCTATAGC
AGCATTTTCCAACTTTATAATAATGCATTTCACTCTCTCACTATTTGAGT
GTTTTTCTTTTCGATATATATTCCTACCTAATTCCTTCTACTTTTACCCT
GTGCTACGCAATCATAACCTTTTTTTTTTTTCCCCCCCCCCCCCACCCCA
TACTTTTTCAGATATCTTCTCCTCCCCCCCTTCTTAAAAAAAAAAAAAAT
ATCGCGCGGGGCGCGGGACCCCCTTACTCCCCCCCCTTTTTTTTCGTTAC
TCCTTCATGCCCTCCTCCCTATTTCCCCCCTTTCATTATCCGTCCTCGTT
TTATTCCCCCCCCTTACTCATTTCCGCCCCCTCCCTCTTCCCCCAACTCC
CTTCCCATCAACCCCGTTCTACCCCCCCCTTCTCACTCCCCCCCCCTAAC
TATCACCCCTCTCCCCCCTCCCTTTATCTTTCTCCTTTCTATTCCCTATA
TCCCCCTTCTTATACGTTTCCCCTCTCCGCCTCCCTTTCCTCTCTTTTTC
CCCTTCTTTCGCCCCTCCCTTTCTATTCTCCATCCCCCTTTCTCCCTACT
TTTCCCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_o21.b1 MSMg01no092_o21.b1 CHROMAT_FILE:
MSMg01no092_o21.b1 PHD_FILE: MSMg01no092_o21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:57 2005
         (367 letters)



>mm_chr2_41536133_41536899
          Length = 767

 Score =  640 bits (331), Expect = 0.0
 Identities = 355/363 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   ggaattccatttgtaagtattcggtttatggaactttccagattccatatccattgttgg 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 ggaattccatttgtaagcattcggtttatggaactttccagattccatatccattgttgg 264

                                                                       
Query: 65  caccacaaatggtcttctattttgactaatgtatcaaattaataaaattcctccagcatt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 caccacaaatggtcttctattttgactaatgtatcaaattaataaaattcctccagcatt 324

                                                                       
Query: 125 gtttgatagagcaatccccgttttaaaatgattgagaacaaaagaaaatctttactagaa 184
           |||||||||||||| |||| ||||||||| ||||||||||||||||||| ||||||||||
Sbjct: 325 gtttgatagagcaaccccccttttaaaattattgagaacaaaagaaaatttttactagaa 384

                                                                       
Query: 185 aactcatgaaaagatgttaatatagcatgtgaatgaccctgtggaccattgccaaattga 244
           ||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||
Sbjct: 385 aactcatgaaaagatattaatatagcatgtcaatgaccctgtggaccattgccaagttga 444

                                                                       
Query: 245 cttatctgaaagcaaatgtattctcctgggaaagaaaagttgattcattattttaaattg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 cttatctgaaagcaaatgtattctcctgggaaagaaaagttgattcattattttaaattg 504

                                                                       
Query: 305 aataataagcactaatcttaataattttaacttatagattgataattcagaaatagtttc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aataataagcactaatcttaataattttaacttatagattgataattcagaaatagtttc 564

              
Query: 365 cac 367
           |||
Sbjct: 565 cac 567


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 367
Length of database: 767
Length adjustment: 9
Effective length of query: 358
Effective length of database: 758
Effective search space:   271364
Effective search space used:   271364
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)