BAC Information

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BAC

Clone NameMSMg01-092O23
Chromosome2 (Build37)
Map Location 42,438,401 - 42,438,572
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneLOC625094
Downstream geneLOC100041228, LOC100041245, Kynu
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-092O23.T7 (MSMg01no092_o23.b1)MSMg01-092O23.TJ (MSMg01no092_o23.g1)
ACCAG310503AG310504
length831859
length of high quality
(start - end)
172 (181 - 352)100 (123 - 222)
definitionCHROMAT_FILE: MSMg01no092_o23.b1 PHD_FILE: MSMg01no092_o23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:57 2005CHROMAT_FILE: MSMg01no092_o23.g1 PHD_FILE: MSMg01no092_o23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:46:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCCTTTTTCCTTTTTTCCCTTCCTCTTCTCGNGCGGCCACCTTTTCCCAT
CTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTTGAAAAATATTCCCTGCACATCAGTGTCACTATGTTATTCCAAAC
CGTGATTTTTAATACTAATTAATTTTCGATAGCTTAGAGGTCCTTATACT
TTTTCATATCACAGCCATCACATCAAGCAGTCCCAGCAGTGACCCAGGCA
TCTGTAGCCTGTTTATGAAGATCATAATGATAGGAAACAATGTTTATCGA
CGCAAGCCTCCTGGTTATCACCCATGCACCACTATAACTTTTGTCAGAGG
AAGCATAGTTTAGTGTGGTGCTCTGTCTTCACTTTCTCTGACTGGCAACA
TTGTGATTTCATTCATGTGCGACGCATTTTTAAATCCAATCTATTCTTAC
CACCAGTTAGGAGAAAGGCTCACTATTCTAGCTCATTAGCTGTTTAATTG
GTAGGCATAACAGGCAATCTTTTGCTCGACTCTCTAACTCTGACATTCAG
TACTGTCGGAAATCCTAGAAGTGAAGTATCATGACTCTGAGAGCCATAGG
CCGAACGCACATGCTCCTGCTTTCCTCCTAGGAATGACGCCACCTTCCTG
CAACCATTTACGAATTGTTCGTAACATATGAAGTTCATCGCACAGAAATC
ATATTACCCAAAATGTGGGGTCCTTCTCCGGCAGTTCAAAAGCTAATTAA
CTACGCTCCCGCGCCCACTCTTCCAAAACTTGGTCCATCTCAACATGGAT
TTGATTACAATAAACGCAATTAAAAGGTTCT
CTTTTTTCTCCTCNNCCCTCCTTTCTTTTCTCCTCCAATCCCCTNCTATC
GATGATCTGTCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCACTTTAGGCCTGTCACTGGACCTTCTT
TTCCTCAGGTTCCTGTCCATTTCCATCCTTGAAATTCTTTCAGAAAAGAA
AATTATGGGTCACAGTTCTGACTGTGGGATTGCAACCCCTTCCTCCTTTA
ACGCCCTGTCTTCCTGCTGGAGATGGGATCTAAAAGTTCTCTCTCTCTAC
TGTCTGGAATTTTATCTAAGGTCCCTTGCTTTCAGCCCTGGTAGTCTCTT
TAAAAATGCAGGTCAAATACACTCCTTTACTATGTCCCGTGATTATCAAG
GCATACTATCTTGCATTTTTTTTTTCGCCACCCCCCCGCCCTATCCTGTT
CTATTCCAGCAATCAACCCCACCACCTCGTATAAAATAAAAATAGCATTT
GCCCGGGGTCGAATTTCCCGTATTCTCCCCCCCCCTAAATTACTTTGCAC
CGCTATCCCGCTTACCCTAATCCCCACTTATCTAAAACAATCCCTACTAT
TTCCCTCCACCCTCGACTGCTGCGCCACCATCCTCATTTTACTTTTGCCT
AACTAAATTTTCCTCGTAATCCCATGTCAAAATAACCCCACTAACTATTC
TATATACCCCCTTTTTACCATCCACTATCATACCGCGACCTTATCACCTT
TTCCCCCTACTTTCTTACTTTTCCCCTTCCCCACCCATTACCTTCTTTTT
TCCCCTCTTTCCCCTTCCTTTCTTTCTTCCTTCCCCTATATCCCGTAATT
TTCCCCCCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no092_o23.b1 MSMg01no092_o23.b1 CHROMAT_FILE:
MSMg01no092_o23.b1 PHD_FILE: MSMg01no092_o23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:46:57 2005
         (172 letters)



>mm_chr2_42438201_42438772
          Length = 572

 Score =  333 bits (172), Expect = 4e-96
 Identities = 172/172 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   agcttagaggtccttatactttttcatatcacagccatcacatcaagcagtcccagcagt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agcttagaggtccttatactttttcatatcacagccatcacatcaagcagtcccagcagt 260

                                                                       
Query: 61  gacccaggcatctgtagcctgtttatgaagatcataatgataggaaacaatgtttatcga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gacccaggcatctgtagcctgtttatgaagatcataatgataggaaacaatgtttatcga 320

                                                               
Query: 121 cgcaagcctcctggttatcacccatgcaccactataacttttgtcagaggaa 172
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgcaagcctcctggttatcacccatgcaccactataacttttgtcagaggaa 372


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 172
Length of database: 572
Length adjustment: 8
Effective length of query: 164
Effective length of database: 564
Effective search space:    92496
Effective search space used:    92496
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)