BAC Information

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BAC

Clone NameMSMg01-093E04
Chromosome2 (Build37)
Map Location 25,726,948 - 25,796,447
singlet/doubletdoublet
Overlap geneKcnt1, Camsap1
Upstream geneEhmt1, Arrdc1, Zmynd19, Wdr85, Mrpl41, Pnpla7, Nelf, Entpd8, Noxa1, Nrarp, A830007P12Rik, A730008L03Rik, 4933433C11Rik, BC061039, Tubb2c, Slc34a3, Gm757, 2310002J15Rik, Rnf208, LOC100039232, Ndor1, C730025P13Rik, C430004E15Rik, Ssna1, Anapc2, 4930571C24Rik, BC004853, Grin1, Man1b1, Dpp7, Uap1l1, 2010317E24Rik, Entpd2, Npdc1, Fut7, Abca2, Clic3, BC029214, Ptgds, EG665070, Lcn12, C8g, Fbxw5, Traf2, Edf1, Mamdc4, Phpt1, Gm996, LOC100039887, B230208H17Rik, 4921530D09Rik, Tmem141, Fcna, Lcn8, Lcn5, LOC620709, Lcn10, Lcn13, Bmyc, LOC383678, Lcn3, Lcn11, LOC620858, Glt6d1, Lcn9, Sohlh1
Downstream geneLOC100040100, LOC665199, Ubadc1, Btbd14a, C330006A16Rik, Lhx3, Qscn6l1, C030048H21Rik, 4932418E24Rik, Gpsm1, D2Bwg1335e, Card9, Snapc4, Sdccag3, Pmpca, Inpp5e, AU024582, Notch1, Egfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582, Abo, Surf6, Surf5-ps, Surf5, Rpl7a, Surf1, Surf2, Surf4, Gm711
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093E04.T7 (MSMg01no093_e04.b1)MSMg01-093E04.TJ (MSMg01no093_e04.g1)
ACCAG310751AG310752
length1,1551,232
length of high quality
(start - end)		142 (21 - 162)255 (71 - 325)
definitionCHROMAT_FILE: MSMg01no093_e04.b1 PHD_FILE: MSMg01no093_e04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:38 2005CHROMAT_FILE: MSMg01no093_e04.g1 PHD_FILE: MSMg01no093_e04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:47:39 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(25,726,948 - 25,727,089)(25,796,198 - 25,796,447)
sequence
TCTTAAGAGGCGTATGTGCAATCCTTGGGTCTCGAGTCCCATGAAGTGCT
TGGACAGGATAGTCAGAGATAGATAGCTCCCTGGGAGCAGAGACAGTTTG
GGAGAAAGCATGGTGAGGTTCTGAGCCCAGAAGTTCCCCTATCCATCTTC
TGTTGCTTTAGATGTGGTCAGATCCACACCTTTATGGCCTGACCTGCGAG
AGGCCCTTCTTGCTTCTCCTCTCCTCCCTTTAGCCCCCTTCCATCCTAAG
AAACTCCTAGCAAGTGCCACCTGTCCCCCCAGGATTTTTTTTTTGTCTTG
CCCCTCTCGCTCCTGGTTTACTTAATTCATATACCCCCCCCTTGTTCTAC
TGTCCCACTTGATTCTTTTGTCTCAGTATATAAATGGTATCCTACTCTTA
CTTCTCCTCTTTATTTTCCTACTTTGTTTGTTTCTCTTCATTTTTCTGTT
CTGATTCTCTCTTTCTCTTATTGTGTCTTTTCCCTCCTCTTTTTTTTTCC
TTTGCTCTTCTCTTTTTTTTTTTTCTTCTCTTTTCTTGTTTTTACTTCTT
TTTCTTTTTCTTTTCCTTCTTCTTTTTTTTTTTTTTCTTTTTTTTTTTTT
TCTTTCTTCTTTTTTCATTTTTTTTTTTTTTTTCTTTCTATCCTTCTTTT
TCCTTTCTCTTTCTATTCTCTCTTTTTCTTACTTTTTCTCTTTCTCTTCT
TCCTTCTTTTCTTTCTTATCTTCTCTTCTTTTCTCTTTTTTTTCTCCTTT
CTTTTTCTTTCTTTTTATCTTTTTTTTTTCCATTTTTTTCTCTTCCTCAT
TTTCTTTTTACTTCTCTCCTTTTCACTTCTTTTATCTTCATCTTCCTTTT
TTTTTTCTTCTCTTTTCTTTCTTTTCTTTTTTTCTTCTTTTTTTTTTTCT
CTTCTTCTTTTTTCTCCTTTCTTTTTTCTCTATTTCTATGTCTTCTTTTT
TTTTTTATTATTTTTTCTTCTTTTCTTTCTCTTATTTTTCTCCTTTCTTC
TTTCTTCTCCTTTCTTCTTCTTCTTCTTTCTTCTCCTCTTTTTTTTTCTT
TTTTTTTTTTTTTCCTTATTCTTTTTTATCTTTCTTTTTTCTCATACTTT
TTCCCTCTTATTCTCTTTTCTCTCTCTCTCCCATATTCTTTTTTTTTTCT
TTCTA

TCTTTTTTTCACATGCGATGCTGGGGXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCCTTTTTTAACTCGGGTTGACGGTCAGCCA
CGAGGTGCAATACGATCATGGCCAGATAAAAAAAACAGGTGAGTCACTGA
ACTGTTTCTGTTGGGTGCTCATTAGACTAAGCAGCAGTTCTCCAGATGTG
TTCCAGGGACCCTTAAAGATTCACCACGCTGCTTCTGGGAGCTGGCAGCT
AGGGATACCACAGCAATGGCAGCATGTGCTGGCACAGCGACTGTATGATG
TATGGTGTCCCAGCAATAGAGGGAGCTGACGGTGCCTCGCAGCAGGGGTC
TGTAGTATCAACAGGCGCTTCCTGTGCTATGGACGCTATTGTTTTTCATG
TTTTTTGTGGTGATTTTTATTCAGGGCTTAAAAAATATCTGAGCTGTCCT
CCGTAGTGTGCTACCTGTACATAATCAAGGTTCATCGGTCCCTTGGTTAC
TTTAAAGGTTGCCTAAAGGACTGTTGGGTCAATGTGTTTTTGAGTCATTC
ACTATTTGTTGCCTCCGCGTTTCTTTTGTCCTATAGCTCTTTATCTCTGT
TTTCTTCTCGTAATATTGTTGTTCTTCCTCCTTCTTTTTATTTCTTTTTT
CTTTGTTTACCTCTGTTCTTTTTTTTCCTCCTCGTTTTTTGTCTGTTTCT
CTGTCCTCCACTTTTTTTTCTTCTTTATGCTTTTCTTTTCTTTTGTTTTT
CTTTTTTCTTTTTTTTTATTTTCCTTTTTTTTTCTTTCTTTTTTTTCTTT
TTTCTTTTTTTTCTTTTTTTTTACTCTTTTCCTCTTTCTTTCTTTTCTTT
TTTTTTTTCTTTCTTTTTTTTTTTTCTTGTTCTTTTTTTTTCTTTTTCTT
TTTTATTTTATTTTCTTTCTTTTTTTTATTTCTTTTTTTTTCTCTTTTTT
CTTTTCTTTTTCTTATTTTTTTGTCTCTTTCTTTTTTTCTTTTCTTCTTT
TTCTTTTTTTTTTCTCTTTTTACTTCTTTTTTATTCTCTATTCTCTTTTC
TTTTTTTTATTCTTTCCTTTATCTTCTTTCTATATTTTTTTCTTTTTTTT
TCTTTTGTTCTTCTCTTCCTCTTCTTTTTATTATTTCTATTCTTTTTTTT
TCTTTCATCTCTCTCCTTTATTTCCTTTCTCTTACTTCTCTACTTTCTCC
TTTTCCTGCTCTTTTACTCTCTATTCCTCCTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_e04.b1 MSMg01no093_e04.b1 CHROMAT_FILE:
MSMg01no093_e04.b1 PHD_FILE: MSMg01no093_e04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:38 2005
         (142 letters)



>mm_chr2_25726748_25727289
          Length = 542

 Score =  259 bits (134), Expect = 4e-74
 Identities = 140/142 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atccttgggtctcgagtcccatgaagtgcttggacaggatagtcagagatagatagctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 atccttgggtctcgagtcccatgaagtgcttggacaggatagtcagagatagatagctcc 260

                                                                       
Query: 61  ctgggagcagagacagtttgggagaaagcatggtgaggttctgagcccagaagttcccct 120
           ||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 261 ctgggagcagagacagtctgggagaaagcgtggtgaggttctgagcccagaagttcccct 320

                                 
Query: 121 atccatcttctgttgctttaga 142
           ||||||||||||||||||||||
Sbjct: 321 atccatcttctgttgctttaga 342


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 5
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 142
Length of database: 542
Length adjustment: 8
Effective length of query: 134
Effective length of database: 534
Effective search space:    71556
Effective search space used:    71556
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no093_e04.g1 MSMg01no093_e04.g1 CHROMAT_FILE:
MSMg01no093_e04.g1 PHD_FILE: MSMg01no093_e04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:47:39 2005
         (255 letters)



>mm_chr2_25795993_25796647
          Length = 655

 Score =  453 bits (234), Expect = e-132
 Identities = 246/250 (98%)
 Strand = Plus / Minus

                                                                       
Query: 6   tttaactcgggttgacggtcagccacgaggtgcaatacgatcatggccagataaaaaaaa 65
           ||||||||||||||| ||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 455 tttaactcgggttgatggtcagccacgaggtgcaataggagcatggccagataaaaaaaa 396

                                                                       
Query: 66  caggtgagtcactgaactgtttctgttgggtgctcattagactaagcagcagttctccag 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 395 caggtgagtcactgaactgtttctgttgggtgctcattagactaagcagcagttctccag 336

                                                                       
Query: 126 atgtgttccagggacccttaaagattcaccacgctgcttctgggagctggcagctaggga 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 335 atgtgttccagggacccttaaagattcaccacgctgcttctgggagctggcagctagtga 276

                                                                       
Query: 186 taccacagcaatggcagcatgtgctggcacagcgactgtatgatgtatggtgtcccagca 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 275 taccacagcaatggcagcatgtgctggcacagcgactgtatgatgtatggtgtcccagca 216

                     
Query: 246 atagagggag 255
           ||||||||||
Sbjct: 215 atagagggag 206


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 255
Length of database: 655
Length adjustment: 9
Effective length of query: 246
Effective length of database: 646
Effective search space:   158916
Effective search space used:   158916
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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