BAC Information

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BAC

Clone NameMSMg01-093I14
Chromosome2 (Build37)
Map Location 27,379,257 - 27,379,530
singlet/doubletsinglet
Overlap geneWdr5
Upstream geneEgfl7, Agpat2, B230317C12Rik, 5730588L14Rik, LOC100039446, Lcn4, LOC669582, Abo, Surf6, Surf5-ps, Surf5, Rpl7a, Surf1, Surf2, Surf4, Gm711, Rexo4, Adamts13, 5930434B04Rik, Slc2a6, LOC665315, 1110002H13Rik, Adamtsl2, C630035N08Rik, Dbh, Sardh, Vav2, D2Bwg1423e, Brd3
Downstream geneRxra, Col5a1, Fcnb, Olfm1, Gm347, 1700007K13Rik, Mrps2, LOC665412, Gbgt1, Ralgds
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093I14.T7 (MSMg01no093_i14.b1)MSMg01-093I14.TJ (MSMg01no093_i14.g1)
ACCAG310959
length1,2661,293
length of high quality
(start - end)
---276 (133 - 408)
definitionCHROMAT_FILE: MSMg01no093_i14.b1 PHD_FILE: MSMg01no093_i14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:48:18 2005CHROMAT_FILE: MSMg01no093_i14.g1 PHD_FILE: MSMg01no093_i14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:48:18 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATATTTTTNNTGCCACTGGGCGCTAAGACTCCTAAGGGAGXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXTGTTCTGCCTCTCCGATCACTTTTTTCTTATTTCCTCC
TCTAGTTATATTTGTCTAAATCCTATCTCACTTAAATTATATTCTTAGTT
TTCTTTCTGTATCTTCCTCATGCACTTTCCTTGTTTTTACTCTTTTTTTT
TATTCATTCTCTTTTTCTTTTTCTCTCTTCTTCTATATTCTTTCTTTTTC
TCTATACTTCTTTCTGTTTATATACTACATTTTTCTTCTTTTCTCTTTAT
TTTTAATTTTTTTTTCTTTATTTTTATTTCTTTTATCATTTTTTTTTTTT
CTATTATTTCTCTTATACTTTTTATTTCTTTCTATCTCTTTTTATACTTT
TCTATTTTCCATTTTTTTTTATTTCTATTCTTTTTTTATTTTTTACTTTA
CTTATTTTTTTCTTTCTATTCTATTTATTTTTATTCTTCTTCTCTCTTTC
ATTATTTCTCTATCTTACTATTTTATATTCTTTTCTTTTATTATTTTTCT
TTTTTCTATTTTTTCTATTATATACTATTATATTTTTTTTTCTTTTCTTA
TTTATTCATTTTTCTTTACTCCTTCCCTCATCATCTCTTATATTTATCAA
TATATCCTTTATATCTCTTTATTTCCTTCCATCTTATTCNTTTCTATTTG
CTCTTNTATCTATATTTATCATTTTTTCCTATATATTTCTTCTCTCTCTT
ATTAACTATTATTTTA
NGGGCTTTTNNNNNNCGTCATGGCAXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTTAAAACAGCCAGGGCTA
CACAGAGAAACCCTGTCTGGCCTTAAAAAAACAAAAAAAAAGGGGGGGGG
GCTAGGTCTGTGCCAAGTTGATGACTCAATTAATGCCCAGCCTCCAAGCC
CTTTCATATACTCTCTCCCTAGCTATAGCCTTTGCCTGTATCAGTGTCCC
CTCAGCCGTTCACTGTGTCTCATCCCCAGTAGGGAGTCCTGTTGACTGGT
ACGCTGTGGGCTCGCTTGCTTGTTTCTCCAAGCTGCTACCTGCACATTGG
CTGCATGGAAACGTCGGGCGCCCATGTTTGCCCCTTACCCCATTATGTTT
GACAATTTTTTTTTTATATTAAAAGTAGAGGTAACTGTGGGTAGTTAGTT
GTATTGCCTTTTTTTTTCCCCCCCCCCCAGAGACTGACTGTTGTGAAAAA
AAAGGGGGGGGGGATCTGACATGCTCTTGTCAACAGCATAAAGTGACCTC
TGGCTCTAGTGCTTTAGACCAGCCTGGCCCATCAGGTCTGTGACGGTAGA
CCCCCTGTAACCTGATGGCTGCTTTAAATTGATCCCAACACGCTGATGCT
GTAATTTTTTCTCTTGCCTGTCATTATATCATGCCCTGCTATTTCCTATG
TAAAACGCTTTTTCTTCCTTCTATCCTTCTCAAATACTTTTTCATATTCT
TTTGATTTTTTGTTTTACATATATTTCATTTTCTCTTTTTTTTTTTTTTT
TTTCTTTCTTTGTCCTTTTTTTCCCCTTACTTCTGTTTACTCTTGTCTCT
TTGTTTTTTCTCTTTCTTTTTTCAGTTCTCTTTTTTTTCTCTTCTTTTTC
AATTGTTTTTTTCCTCTATTCTTTCCTTATCTTTTTTCCTTTTTTTTTTC
TTTTCTCTTTTTCTTTTTCATTACTCTTTATTATATATTTTTTTTTATTA
TCTCTCTCTTCGCTCTTTCTATTCCTTATTGTCTTTTTTTTTTTCTCTAT
TTTCTTTCTTTCTTTCCTTTATACTCCACTGTATTCTTTTGCTTATTCCC
TATTTATTTTCTTTTTATCTTTTTTAATCTCTTTAATTATCTCTATTACT
CACATTTCTCATCTAATTATCACTCTTTACTCCTCTATGCTCTATTCTCT
CTATTAACTCCTTATCTTATTTGTTCACTCTCTCATCTACTTTTTTCTTT
CCTCTAATATACAGCTTCCTTCCTCACCTTTGATTCCCATCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_i14.g1 MSMg01no093_i14.g1 CHROMAT_FILE:
MSMg01no093_i14.g1 PHD_FILE: MSMg01no093_i14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:48:18 2005
         (276 letters)



>mm_chr2_27379057_27379730
          Length = 674

 Score =  453 bits (234), Expect = e-132
 Identities = 265/276 (96%), Gaps = 2/276 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaaaaaaaaggggggggggctaggtctgtgccaagttgatgactcaattaatgcccagcc 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaaaaaaaagggggggggcctaggtctgtgccaagttgatgactcaattaatgcccagcc 260

                                                                       
Query: 61  tccaagccctttcatatactctctccctagctatagcctttgcctgtatcagtgtcccct 120
           |  |||||||||  |||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 261 ttgaagcccttttgtatactctc--cctagctatagcctttgcctgtatcagtgtcccct 318

                                                                       
Query: 121 cagccgttcactgtgtctcatccccagtagggagtcctgttgactggtacgctgtgggct 180
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 319 cagccgttcactgtgtctcatccccagtagggagtcctgttgactggtaccctgtgggct 378

                                                                       
Query: 181 cgcttgcttgtttctccaagctgctacctgcacattggctgcatggaaacgtcgggcgcc 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 379 ggcttgcttgtttctccaagctgctacctgcacattggctgcatggaaacgtcgggggcc 438

                                               
Query: 241 catgtttgccccttaccccattatgtttgacaattt 276
           ||||||||||||||||| ||||||||||||||||||
Sbjct: 439 catgtttgccccttaccacattatgtttgacaattt 474


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 674
Length adjustment: 9
Effective length of query: 267
Effective length of database: 665
Effective search space:   177555
Effective search space used:   177555
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)