BAC Information

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BAC

Clone NameMSMg01-093N13
Chromosome2 (Build37)
Map Location 160,389,018 - 160,389,396
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043689, Gm826, Mafb
Downstream geneLOC100043892, Top1, Plcg1, Zhx3, Lpin3, Emilin3, Chd6, LOC100043693, LOC100043694, LOC383769, LOC629655, LOC383770, Ptprt
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-093N13.T7 (MSMg01no093_n13.b1)MSMg01-093N13.TJ (MSMg01no093_n13.g1)
ACCAG311178AG311179
length1,1751,258
length of high quality
(start - end)
---380 (73 - 452)
definitionCHROMAT_FILE: MSMg01no093_n13.b1 PHD_FILE: MSMg01no093_n13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:04 2005CHROMAT_FILE: MSMg01no093_n13.g1 PHD_FILE: MSMg01no093_n13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:49:04 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACCCTAAAAAACGCCTTTAANCCCAGCACTCGGGAGGNAGACTCTTAAAA
ATCTCTGAGNGCCAGGCCCCCCTGGACTACAAAGTGAGTTCCAGGACAAC
CAGGGCTATAAAGAAACACCCTGTCTCGAAAAGCCAAAAAAAAAAAAAAA
AAGAATTCACTCTGAAGCAAATCCTGGGCTGGGTATGTGGGTCAGGATCC
GATCACTTGTATAGCAAATGTGGGTAAAGCCCTGGAGATTCAATCCTCAG
TACTACAAACTATTTTCATATTCTATGGCTGGAGGTGTAAGCCTTTAATA
TCCACAAAGGCAGGCATTGCAATCACTTCTCTTTTTTTTTGTACCACGAC
AGACCTACATATTAATATCCTGTCAACAACCCCCCTATTTATTCCCCCCC
CCCTGAATTATGTTTTTTACTCTAAAAAAAAACAAGCGTTTATTTTCTTT
CTTTTTCTTTTATTTATTTTTCTCCTTATTTTCTATCTTTATTTTTTCTT
GTTTTCTTCTCTATTTTATTTCTAATTTATTTATTTATTCACTCTTTTTC
CCTTATTTTCCCTTTTTTTTTTTTCCCTATTATATCTTTTTTATTTTATT
TTTTTCTTCTTTTTTTATTTATTTCTTTTTTTTATTTTCTCATTTTTTCC
TTCCTTATCTTATTTCTTTTTATTATTCTATTTTTTCCTTTTTTTTCTTT
TCATATTTTTTTTTTCTATTCTTATTTTCCCCTATTTATTCTTTTTTTTT
TTCATTCTATTTTCCCTTTTTCTTTTTATCATTTTTTTTTATTTTCTTCT
TTTTCTTTTTATTTTATTTTTCTTATTTTTATACTAATTATTTCTCTTTT
TATTCTATCCCCCCTTATTTTTTTCTTTTTTTTTTTTTTTTTCTTCTTTT
TTTTTTTTTTCTTTTTCCTCCTTTATTTATATCTTATTTTTTACTTTCTT
TTCCTTTTCTATACCTTCTCATTTCCTTTATATATCTTTTTTATATTACT
ATTTCAACTTTATTTTTATATTTACTATTATTTTCTTTTCTTTTATCTTT
TCATAATTTATTTTTCTTTTTACTTCACATAATTAGTTCTTTTTCTTTCT
TCTTTTATATTATTATATTTCACTTCTATATTTCTTATTCAATCTTATTA
GTATACTCATATTCTTATTCTTTCT
NNCCTAACATGTGAGCCTGGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXAGTCCCTAGACCCATGTAAAGGTGGAGG
GAAATAATTGACTCCACAAAGCTCTCACCTCCCCCTCTACACACATCACA
CACATACACACACATGCAGAGAGAGACAGAGAATAAATACAGTTTTTAAA
AAGAACTAACAGCAGAGACAGCTGAACTCTGAGGAGTTCTGACACAACCA
GGATCACCGGAAGGACAGGCCTCAGTCAGATATATCAAGAGCAGGTAGCA
CTAGAGATAATCAGATGGTGGGAGGCAAGCACAAGAACATAAGCAACATA
AACCAAGGTTACTCGGCATACAATTCTCCTACCATAGCAAGTCCTGGATA
CTTTTTTCATGCCAGACAAGCAAGATTTGGCTCTAAAATCACCTCTCATG
ATGGTTTTTTTTCCCCCCCCCCAGGTCATAAATATCTCTCTTAAAAAAAA
GAGCGGGGCTGGTGAGATGGCTCCGTGGGTAAAAGCACCCGACTGCTCTT
CTGAAGGTCCCGAGTTCCACCCCCAGCACCCACATGGTGGCTCACACCCA
TCCCTATCGAGATCTGACTCCCTCTTCTGGAGCGTCTGAAGACAGTTACA
GTATACTTACATATTAATCAATAAATAATTCTTTAATACAAAATACAGAA
AAACACAGTTGAACCGCTATAAAGTCCTTATAGAGGAACATTTTCTTTTT
CTCTTAAAGGACTTACCGCATAATCTTCTCTATTATTTTAAACGAAAATG
AATCAAATTATTCTTCTATCTAATCTTTGTGAACTATCAATCATTTAAAG
AACTCTCCAAGGGAAAACAACCTCTGTAAATACCAATACCTATGTCAAAA
GATCCCGGACCCTTGGAAAATCCATTTATTGCTATTTACATATGCCTTTA
TCTTCTAATAAATAGATTCTCCCTGGTTTCATTATAATTACCTTTATAAA
ATAACTTTCTATTTACTCGTTCTTATAAAACTGTCAATATGTCTCTTTAC
CTCTTAATCTCCAAAATCATCCCTCGGATTATCTCTGTATTCCTCTTCTA
CTTCGTAACTCAGCCTCTTTTTGTCTAATATGCTGCTCTTATCAAGGTTA
TGTCTAACATAATTCTCTCTCCTTCTCATAGTATATTGTTACCTATTCTT
CTCATACTGTATCTTTATCATTCATAATTAATCTTTTTCTCATAATACCT
AGTTATTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no093_n13.g1 MSMg01no093_n13.g1 CHROMAT_FILE:
MSMg01no093_n13.g1 PHD_FILE: MSMg01no093_n13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:49:04 2005
         (380 letters)



>mm_chr2_160388818_160389597
          Length = 780

 Score =  648 bits (335), Expect = 0.0
 Identities = 368/385 (95%), Gaps = 11/385 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtccctagacccatgtaaaggtggagggaaataattgactccacaaagctctcacctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtccctagacccatgtaaaggtggagggaaataattgactccacaaagctctcacctcc 260

                                                                       
Query: 61  ccctctacacacatcacacacatacacacacatgcagagagagacagagaataaatacag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccctctacacacatcacacacatacacacacatgcagagagagacagagaataaatacag 320

                                                                       
Query: 121 tttttaaaaagaactaacagcagagacagctgaactctgaggagttctgacacaaccagg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttaaaaagaactaacagcagagacagctgaactctgaggagttctgacacaaccagg 380

                                                                       
Query: 181 atcaccggaaggacaggcctcagtcagatatatcaagagcaggtagcactagagataatc 240
           ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 381 atcacaggaaggacaggcctcagtcagatatatcaagagcaggtagcactaaagataatc 440

                                                                       
Query: 241 agatggtgggaggcaagcacaagaacataagcaacataaaccaaggttactcggcataca 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 441 agatggtgggaggcaagcacaagaacataagcaacataaaccaaggttacttggcataca 500

                                                                       
Query: 301 attctcctaccatagcaagtcctggatactttttt-----catgccagacaagcaagatt 355
           |||||||||||||||||||||||||||||           ||||||||| ||||||||||
Sbjct: 501 attctcctaccatagcaagtcctggatac------accaccatgccagaaaagcaagatt 554

                                    
Query: 356 tggctctaaaatcacctctcatgat 380
           ||| ||||||||||| |||||||||
Sbjct: 555 tggatctaaaatcacttctcatgat 579


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 380
Length of database: 780
Length adjustment: 9
Effective length of query: 371
Effective length of database: 771
Effective search space:   286041
Effective search space used:   286041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)