BAC Information

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BAC

Clone NameMSMg01-094G12
Chromosome2 (Build37)
Map Location 75,624,492 - 75,790,391
singlet/doubletdoublet
Overlap geneLOC623453, Agps, Ttc30b
Upstream geneMtx2, LOC667817, A330043C09Rik, LOC667739, LOC545423, LOC100040324, LOC667828, Hnrpa3, Nfe2l2, E030042O20Rik
Downstream geneTtc30a2, Ttc30a1, Pde11a, Cyct, Drbp1, Osbpl6, Prkra, Dfnb59, Fkbp7, Plekha3, Ttn
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094G12.T7 (MSMg01no094_g12.b1)MSMg01-094G12.TJ (MSMg01no094_g12.g1)
ACCAG311587AG311588
length768685
length of high quality
(start - end)
316 (109 - 424)494 (55 - 548)
definitionCHROMAT_FILE: MSMg01no094_g12.b1 PHD_FILE: MSMg01no094_g12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:02 2005CHROMAT_FILE: MSMg01no094_g12.g1 PHD_FILE: MSMg01no094_g12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:02 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(75,790,079 - 75,790,391)(75,624,492 - 75,624,986)
sequence
NNTTTTTTTTTTTTTNNNNNNTTNCCCNNTTTTCTTTTNCCCCCCTCNCC
CCCCCCTTTTCTATTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXCGCGGAATTCCTGGTAAACCCCATCTAATTGGCTACATTTAC
ATCAAGCTACCCAGGCAAAACTGACCACATTGGTTTCCTTGATTGATTGG
CAGGAACACACTGACTTTACAGAGAATGGGGTAGGAATGTCTTTTCCAAA
GGAGAAGAAGAGAAATCAAAAGAGTGGGACAACTGAGCAGCCAAAAATGA
CAAATGTTCACCCCTCAAAGAAAGAGCATCCTTTTCATTATGACCATCTT
TGCTCTGACTTGTCATTAATCAGATTTTACCAAGAGGAAGAGACATCAGA
GTTTACTTAGTACCTACCTAAAGTCTTAGAGATCTACCCCCTCAGATTGC
CCTTCCCAATACAATACTGTCCTTTTGACGCCACAGATATAGGACAATTA
TTAGTGATGGATTATTCGTGCACGGAAGGCCATGGGTTCGATCCCTAGCA
CGGTAAAAATCTAAACATAAAACAAAATTCCGCATACTCTGTTCTGCTGG
GACGTACAACCCAGCGTATACCGATACGTCTAGTAAAGTCCATGAACTAC
CAACACCCTGTCGGCCCCCTCCTGTACCTCACGGCTTCTCCTTTCTGCCT
CCCGGGCATCCCAATTTTCCTTCTGACTCTCTGGCTGTATCCCTATAAGC
TAAACGACCCCTTGGCTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXAGCCGAGAGACTTACTGACTAGGGAAAATCAGAATCCCGGAGCCAT
TTGCCTTGTAAATGGTGTCTCATGATTTTGAAAGGGCATCAGGAGGGGCT
TGAAATTCTCAAGGGAAATATAGATTGGACCAATCCCGACTTCCCTAACA
ATGAAGTCATAAATGAAGAAGTGTGCAAACTCCATGTGAAGACAACTATA
ATATTACTCAAGGGTAGAAAAGAATACTTAAATTGAGATATACCATGTTC
TTGGATACAAAGGTTCAGTGCTGTATAAATTTAAAGCTATTCTACAAATA
TACTCACACATATAATGTGATCAAAAATTTTTTTAGAAACTTGATAAAGC
TTATTGAGGACAATGAAGCTGGAAAAAATAAAGGAAGAAAATTGAACTTT
TTGAAGGGGAAGAGAATTTGAACCACTGGTTTTTTGTTTGTCTGTTTTAT
TTTAAATCATGAAACAGTTGAACGTAAATATCTCTTTATAGGTCTCTGGG
AATGGCTGAGCAGGGAACATGCCTGCCACACATGCATGAAGATGTGAGTT
TGTATACCTAGATTATACCTACTATATGTCTGCAACTCTAGCACTGGTGG
CAATGAGGCTTGGCCCATTATTATTTTACGCCTGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_g12.b1 MSMg01no094_g12.b1 CHROMAT_FILE:
MSMg01no094_g12.b1 PHD_FILE: MSMg01no094_g12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:02 2005
         (316 letters)



>mm_chr2_75789875_75790591
          Length = 717

 Score =  567 bits (293), Expect = e-166
 Identities = 308/315 (97%), Gaps = 5/315 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctggtaaacccc---atctaattggctacatttacatcaagctacccaggcaaa 61
           ||||||||||||||  ||   |||||||||||||||||||||||||||||||||||||||
Sbjct: 517 gaattcctggtaaa--cctaaatctaattggctacatttacatcaagctacccaggcaaa 460

                                                                       
Query: 62  actgaccacattggtttccttgattgattggcaggaacacactgactttacagagaatgg 121
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 actgaccacattggtttggttgattgattggcaggaacacactgactttacagagaatgg 400

                                                                       
Query: 122 ggtaggaatgtcttttccaaaggagaagaagagaaatcaaaagagtgggacaactgagca 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ggtaggaatgtcttttccaaaggagaagaagagaaatcaaaagagtgggacaactgagca 340

                                                                       
Query: 182 gccaaaaatgacaaatgttcacccctcaaagaaagagcatccttttcattatgaccatct 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gccaaaaatgacaaatgttcacccctcaaagaaagagcatccttttcattatgaccatct 280

                                                                       
Query: 242 ttgctctgacttgtcattaatcagattttaccaagaggaagagacatcagagtttactta 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ttgctctgacttgtcattaatcagattttaccaagaggaagagacatcagagtttactta 220

                          
Query: 302 gtacctacctaaagt 316
           |||||||||||||||
Sbjct: 219 gtacctacctaaagt 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 717
Length adjustment: 9
Effective length of query: 307
Effective length of database: 708
Effective search space:   217356
Effective search space used:   217356
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no094_g12.g1 MSMg01no094_g12.g1 CHROMAT_FILE:
MSMg01no094_g12.g1 PHD_FILE: MSMg01no094_g12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:02 2005
         (494 letters)



>mm_chr2_75624292_75625185
          Length = 894

 Score =  926 bits (479), Expect = 0.0
 Identities = 491/495 (99%), Gaps = 1/495 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   agccgagagacttactgactagggaaaatcagaatcccggagccatttgccttgtaaatg 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 agccgagagacttactgactagggaaaatcagaatcccggagccatttgcattgtaaatg 260

                                                                       
Query: 61  gtgtctcatgattttgaaagggcatcaggaggggcttgaaattctcaagggaaatataga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gtgtctcatgattttgaaagggcatcaggaggggcttgaaattctcaagggaaatataga 320

                                                                       
Query: 121 ttggaccaatcccgacttccctaacaatgaagtcataaatgaagaagtgtgcaaactcca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttggaccaatcccgacttccctaacaatgaagtcataaatgaagaagtgtgcaaactcca 380

                                                                       
Query: 181 tgtgaagacaactataatattactcaagggtagaaaagaatacttaaattgagatatacc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtgaagacaactataatattactcaagggtagaaaagaatacttaaattgagatatacc 440

                                                                       
Query: 241 atgttcttggatacaaaggttcagtgctgtataaatttaaagctattctacaaatatact 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atgttcttggatacaaaggttcagtgctgtataaatttaaagctattctacaaatatact 500

                                                                       
Query: 301 cacacatataatgtgatcaaaaattttttt-agaaacttgataaagcttattgaggacaa 359
           |||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 501 cacacatataatgtgatcaaaaattttttttagaaacttgataaagtttattgaggacaa 560

                                                                       
Query: 360 tgaagctggaaaaaataaaggaagaaaattgaactttttgaaggggaagagaatttgaac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgaagctggaaaaaataaaggaagaaaattgaactttttgaaggggaagagaatttgaac 620

                                                                       
Query: 420 cactggttttttgtttgtctgttttattttaaatcatgaaacagttgaacgtaaatatct 479
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 cactggttttttgtttgtttgttttattttaaatcatgaaacagttgaacgtaaatatct 680

                          
Query: 480 ctttataggtctctg 494
           |||||||||||||||
Sbjct: 681 ctttataggtctctg 695


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 494
Length of database: 894
Length adjustment: 10
Effective length of query: 484
Effective length of database: 884
Effective search space:   427856
Effective search space used:   427856
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)