BAC Information

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BAC

Clone NameMSMg01-094I08
Chromosome2 (Build37)
Map Location 56,338,235 - 56,338,463
singlet/doubletsinglet
Overlap genenone
Upstream geneKcnj3
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094I08.T7 (MSMg01no094_i08.b1)MSMg01-094I08.TJ (MSMg01no094_i08.g1)
ACCAG311670AG311671
length781681
length of high quality
(start - end)
234 (110 - 343)439 (56 - 494)
definitionCHROMAT_FILE: MSMg01no094_i08.b1 PHD_FILE: MSMg01no094_i08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:12 2005CHROMAT_FILE: MSMg01no094_i08.g1 PHD_FILE: MSMg01no094_i08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCTTTTTNNNCNCCCCCTTNC
CCCCCNNNTTCTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCGCGGAATTCCTAAAGAGTCTGGACTATTATGTCTGGTTAA
TTTGGTTTTTTCATCATTAAATGAAGTCTCCACTTACCAGAAAAGGCATT
CTTTTTAATTGTGGCTATTAATTTGGCTTTGCTGAGATTGGCTTTCTGCC
ACCTGTGCTGATACCAACTAGACTCAAACTCATAGAAGTCCCCTTGCTTA
AGCCGTTAAATGCTGGGATTATAAACATGTGCTACTATGTTTAGCAAAAC
AGTATATTTTTTATGATGCCAATTTTGTCTGACATATCATTACTATTTTC
AAGGCATGTCATTTTCTATCTTATTGTTTTTGCACCTCTCGCGCCCTGTT
TAACACTCATTTGACGAGATCCTTCTGAATACCCCTTACCTCCATTAACA
TTTGATATGACTCTGTGCGAACTTACCATGACTAGATTTATTGATTTGTA
AAGTCTGTATTATCTGTTACGATCCTTCCTTTGGATCTAATTTCCCTGTA
TTATTCATCACCCTTAATCTCGCTTTGCCTACACAAACATGATACTTTTC
TGACATGTCCTCCCCTATCGCTACCCTTCTTGCATTAAGCGCTCCGTATT
CCTTTAACTATTTCGCCTTCCATTATCATTAATCACTATATTCCTCTCCT
TATTTTTATTTTTATGCTTTCCAATTCATTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGCACTTGAAAAAATGT
TCCACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GAGTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGACGGTTCCTCAG
AAAACTGGACATAGTACTACCGGAGGATCCAGCGATACCTCTCCTGGGCA
TATATCCAGAAGATGCCCCAACAGGCAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAATGG
AGTACTACTCAGCTATTAAAAAGAACGAATTTATGAAATTCCTAGCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACTAAG
AAACTCATACAACCACGTATTCTCTGATAAGCGCATATTAGTCCCAAACC
TAGGATACCCCATATATATGATATCCCTTGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_i08.b1 MSMg01no094_i08.b1 CHROMAT_FILE:
MSMg01no094_i08.b1 PHD_FILE: MSMg01no094_i08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:12 2005
         (234 letters)



>mm_chr2_56338136_56338768
          Length = 633

 Score =  398 bits (206), Expect = e-115
 Identities = 224/230 (97%), Gaps = 1/230 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcctaaagagtctggactattatgtctggttaatttggttttttcatcattaaatg 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 gaattcctaaacagtctggactattatgtctggttaatttggttttttcatcattaaatg 269

                                                                       
Query: 65  aagtctccacttaccagaaaaggcattctttttaattgtggctattaatttggctttgct 124
           |||||||||||||  |||||||||||||||||||||||||| ||||||||||| ||||||
Sbjct: 268 aagtctccactta-gagaaaaggcattctttttaattgtggttattaatttggttttgct 210

                                                                       
Query: 125 gagattggctttctgccacctgtgctgataccaactagactcaaactcatagaagtcccc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 209 gagattggctttctgccacctgtgctgataccaactagactcaaactcatagaagtcccc 150

                                                             
Query: 185 ttgcttaagccgttaaatgctgggattataaacatgtgctactatgttta 234
           |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 149 ttgcttaagcagttaaatgctgggattataaacatgtgctactatgttta 100


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 633
Length adjustment: 9
Effective length of query: 225
Effective length of database: 624
Effective search space:   140400
Effective search space used:   140400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)