BAC Information

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BAC

Clone NameMSMg01-094M16
Chromosome2 (Build37)
Map Location 104,406,062 - 104,406,493
singlet/doubletsinglet
Overlap genenone
Upstream geneAbtb2, Nat10, Caprin1, LOC433458, LOC100042961, LOC100042965, Lmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733
Downstream geneCstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4, Ccdc73, Ga17, 2210415I11Rik, LOC622356, Wt1, 0610012H03Rik, Rcn1, Pax6os1, LOC100043391
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094M16.T7 (MSMg01no094_m16.b1)MSMg01-094M16.TJ (MSMg01no094_m16.g1)
ACCAG311865AG311866
length683707
length of high quality
(start - end)
317 (36 - 352)439 (74 - 512)
definitionCHROMAT_FILE: MSMg01no094_m16.b1 PHD_FILE: MSMg01no094_m16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:35 2005CHROMAT_FILE: MSMg01no094_m16.g1 PHD_FILE: MSMg01no094_m16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTTTGT
CAATCTATATGTCTATATATTTAAAACCTTATAGTCTTGATAATTAGCAT
GACAGTCTTGACCTCAGCGCAAATCTTCTAGCTGCCTTTATAGAATAGTC
TTGGCTCTCTGGGTCTTTTGCATTTCCATATAAATTTTAGAAGCAATTGG
GAAATTTCAAAAAAGTCTGCTGGGACTTTGGTTAGAATATATTTAGTCAA
TATGTTGACTTAGAGGAAATTGACATCTCTATTATATCAAGAATTGAAAA
AATATTATATAGGCTTTATTTTAGATATTTGTTATATCTTACCAATATGT
TTTATTTTACCCCCACCCCTATTTTGAATTTATTTTCTGAAAATTCTTAG
AATTTTGCGAGAATAAATACTTTTATAACTTCCCTTCGCCATATGCAATT
ATATATATATTACCTAGTTTTAAGGTGAGACCTTATGTACAAAATCCAGG
CTGACCTTGAACTTCTGATTCTACTGCCTCTACTTTCCTAGTACTGTAAA
TGCAACATGATGGCCACAATGACTCTTCCTCCTCCTCTTCTACTTCCTCC
GTCTTCCTCATCTTCAACATCATGCTCTTAACTCGCATTCATTCTTATCT
ACCTATTTCATCCATTTCCTACTTCCTTCACCC
CAATACAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAGGCCAGCTTGGGTCTACAGAGTGAG
TTCCAGGAAAGCCAGGGCTACATAGTGAGACCCTGTCTTGAACAACAACA
ACAACAACAAAATAACTTTTCATCTGTTTAACATTTTTGTGTTTTTAATG
TGTCAGACACTGCGCTAAATGCATTACTAATCCTAATTGATTTAATCTCC
GTTATAGCCATAGGAAGTAAGACGCTTGATCTAATTTCTCTGTTGGATCC
AAAGAAATTACCAGACACAGCATTCTAAGGAATTGCTGTGTTTGTTCTAA
GAAAAAAAAATTCAATAAAATAAGAGCCTTGTTAATGAAATACAGATGTG
GAAAAATAAAGGAAATCCAAGACACAAAATCCATCAGCTTGGAGTTACCG
TTAGATAGTTCAAAGCAATCTACAGGAAAGAGATCTTCTACCCTTTCATG
GGTCAGAGTTTAGATGTGGGCCATAAATAGTTGTCAGTAATATCTGCAAG
AAGTGTTGAGTCAGTGGTGGTGGCCCACATCTTTAATCCCAACATTTGCC
TAGCAAACGCAGGCATGATCTCTGAGTTTGGCACCAGTTTGCTCTACCAG
AGAGAATTTCAGAATACCCCAGGCTAAACAGAGAAACTCTCTCTCTCTCT
CTCCCTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_m16.g1 MSMg01no094_m16.g1 CHROMAT_FILE:
MSMg01no094_m16.g1 PHD_FILE: MSMg01no094_m16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:35 2005
         (439 letters)



>mm_chr2_104405856_104406693
          Length = 838

 Score =  814 bits (421), Expect = 0.0
 Identities = 432/439 (98%), Gaps = 7/439 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   caggccagcttgggtctacagagtgagttccaggaaagccagggctacatagtgagaccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 caggccagcttgggtctacagagtgagttccaggaaagccagggctacatagtgagaccc 266

                                                                       
Query: 61  tgtcttgaacaacaacaacaacaacaaaataacttttcatctgtttaacatttttgtgtt 120
           |||||||||||||||||||||      |||||||||||||||||||||||||||||||||
Sbjct: 267 tgtcttgaacaacaacaacaa------aataacttttcatctgtttaacatttttgtgtt 320

                                                                       
Query: 121 tttaatgtgtcagacactgcgctaaatgcattactaatcctaattgatttaatctccgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttaatgtgtcagacactgcgctaaatgcattactaatcctaattgatttaatctccgtt 380

                                                                       
Query: 181 atagccataggaagtaagacgcttgatctaatttctctgttggatccaaagaaattacca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atagccataggaagtaagacgcttgatctaatttctctgttggatccaaagaaattacca 440

                                                                       
Query: 241 gacacagcattctaaggaattgctgtgtttgttctaagaaaaaaaaattcaataaaataa 300
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 441 gacacagcattctaaggaattgctgtgtttgttctaagaaaaaaaa-ttcaataaaataa 499

                                                                       
Query: 301 gagccttgttaatgaaatacagatgtggaaaaataaaggaaatccaagacacaaaatcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gagccttgttaatgaaatacagatgtggaaaaataaaggaaatccaagacacaaaatcca 559

                                                                       
Query: 361 tcagcttggagttaccgttagatagttcaaagcaatctacaggaaagagatcttctaccc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tcagcttggagttaccgttagatagttcaaagcaatctacaggaaagagatcttctaccc 619

                              
Query: 421 tttcatgggtcagagttta 439
           |||||||||||||||||||
Sbjct: 620 tttcatgggtcagagttta 638


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 838
Length adjustment: 9
Effective length of query: 430
Effective length of database: 829
Effective search space:   356470
Effective search space used:   356470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)