BAC Information

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BAC

Clone NameMSMg01-094N05
Chromosome2 (Build37)
Map Location 110,679,595 - 110,680,167
singlet/doubletsinglet
Overlap genenone
Upstream geneLin7c, Lgr4, Ccdc34, LOC668797, Bbox1, 1110018M03Rik, LOC668799, Slc5a12, Muc15
Downstream geneLOC668802, LOC623270, LOC623301, 4930430A15Rik, Olfr1275, Olfr1276, Olfr1277, Olfr1278, Olfr1279, Olfr1280, Olfr1281, Olfr1282, Olfr1283, Olfr1284, LOC100043465, Olfr1285, Olfr1286, Olfr1287, Olfr1288, Olfr1289, Olfr1290, GA_x5J8B7W4T2P-95628-96096, Olfr1292-ps1, Olfr1293, Olfr1294, Olfr1295, LOC668822, Olfr1297, Olfr1298, Olfr1299, Olfr1300-ps1, Olfr1301, Olfr1302, Olfr1303, Olfr249-ps1, LOC668825
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-094N05.T7 (MSMg01no094_n05.b1)MSMg01-094N05.TJ (MSMg01no094_n05.g1)
ACCAG311890AG311891
length701714
length of high quality
(start - end)
658 (44 - 701)573 (74 - 646)
definitionCHROMAT_FILE: MSMg01no094_n05.b1 PHD_FILE: MSMg01no094_n05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:38 2005CHROMAT_FILE: MSMg01no094_n05.g1 PHD_FILE: MSMg01no094_n05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:38 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCAAGCCACATACCTAAACATAATAAAAGTAATATACAGCAAATAAACA
ACCAACATCAAGTTAAATGCAGAGAAACTTAAAGCAATTTCACTAAAATC
AGGGATAACACAAAGCTGCCCACTCTCTCTATCTGTCTAATGCAGTTCTC
AAAGTTCTAGCTAGAGCAATAAGACAACAAAAGAAGATCAAGTGCATAAA
AATTGGAAAAGAATTCAAGGTATTACTATTTGCAGATGATATGATAGTAT
ACATAAGTGACTCAAGCAAAATTTCTACCTGAGAATTCCTACAGCTAATA
AAAAACTCCAGGAAAGTGCCTTGAAATGAAGTTAACACAAACAAATCAGT
AGCCTTCCTTTATTCAAATGATAAATGGGCTGAGAAAGAAATTGGGGAAG
CAACACCTTTCACAATCACCACAAATAATATAAAATATCTTGGTGTGACT
CTAACCAAACAAGTGAAAGATCTGTATGACAAGAGCTTTAAATCTCTGAA
GAAAGAAATCAAAGGCGACCTCAGAAGATGGAAAGATTTCTCATGCTCAT
GGACTGGAAGGATTCACATAGTANATACAGCCATCCTACCAAAAGTAATA
TATAGATTCAATGCAATCCCCATCAAAATTCCAACGCAATTCTTCACAGA
C
CAATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAAATGCAGCTGATCCCAGAACTCTGA
ATGTGGTATGTTTAAAAGTGCCTCAATCTAGGAATTTTGTACTGCTGTTC
TGTTTGGTTAAGCATGCATAGTGAAAGCAAGGAAGAATAACAGGTATTGA
TTTTCAAAATTGAGAATGGAGAGTTTTAAATTTTTCTTGATGCTAGAAAT
GAATCTGTTAAAGTGAAATGGTGTGATCTAAATGTGGATTTGATAATGAG
TGGTGTGTATCTTGCATGCAGAACAGTTACCACCTCTCCGTGACGTTTTG
GCTGTGCTTAGATCTATTACTTTTGGTTTCATGAAAAAAAGTATTCAGAA
ATTCTACCTAAAATAGATGTAGATATGGAATTATGTAAAGCATATTCTTT
TTAAGGATACGTGTTTTCTGATCATTCTTAAGGTATAATTTCATCTGTGA
CTTCTTTGCTAATGTCAAAGTACAGAGTCTCAGAAGAAATGCTGTAAGGA
AGGAAAACAGGATTAAACCTGANACTACAGAAATGACCTGACTTTGAATA
GCACTAGTATGCTGGGAAAGGGCATGTCTTCAACCTGCTTTCTTTGTGTT
CTATGCCCTTAAAAGTTACTCTTAAAGTATTTACCATTTCATCAATATTT
GTTTTCATTTCTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no094_n05.g1 MSMg01no094_n05.g1 CHROMAT_FILE:
MSMg01no094_n05.g1 PHD_FILE: MSMg01no094_n05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:38 2005
         (573 letters)



>mm_chr2_110679395_110680367
          Length = 973

 Score = 1071 bits (554), Expect = 0.0
 Identities = 568/573 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaatgcagctgatcccagaactctgaatgtggtatgtttaaaagtgcctcaatctagga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 773 caaatgcagctgatcccagaactctgaatgtggtatgtttaaaagtgcctcaatctagga 714

                                                                       
Query: 61  attttgtactgctgttctgtttggttaagcatgcatagtgaaagcaaggaagaataacag 120
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 713 attttgtactgccgttctgtttggttaagcatgcatagtgaaagcaaggaagaataacag 654

                                                                       
Query: 121 gtattgattttcaaaattgagaatggagagttttaaatttttcttgatgctagaaatgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 653 gtattgattttcaaaattgagaatggagagttttaaatttttcttgatgctagaaatgaa 594

                                                                       
Query: 181 tctgttaaagtgaaatggtgtgatctaaatgtggatttgataatgagtggtgtgtatctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 tctgttaaagtgaaatggtgtgatctaaatgtggatttgataatgagtggtgtgtatctt 534

                                                                       
Query: 241 gcatgcagaacagttaccacctctccgtgacgttttggctgtgcttagatctattacttt 300
           ||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct: 533 gcatgcagaacagttaccacctctcggtgacgttttggctgtgcttagatgtattacttt 474

                                                                       
Query: 301 tggtttcatgaaaaaaagtattcagaaattctacctaaaatagatgtagatatggaatta 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 tggtttcatgaaaaaaagtattcagaaattctacctaaaatagatgtagatatggaatta 414

                                                                       
Query: 361 tgtaaagcatattctttttaaggatacgtgttttctgatcattcttaaggtataatttca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 tgtaaagcatattctttttaaggatacgtgttttctgatcattcttaaggtataatttca 354

                                                                       
Query: 421 tctgtgacttctttgctaatgtcaaagtacagagtctcagaagaaatgctgtaaggaagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 tctgtgacttctttgctaatgtcaaagtacagagtctcagaagaaatgctgtaaggaagg 294

                                                                       
Query: 481 aaaacaggattaaacctganactacagaaatgacctgactttgaatagcactagtatgct 540
           ||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||
Sbjct: 293 aaaacaggattaaacctgaaactacagaaatgacctgactttgaatagctctagtatgct 234

                                            
Query: 541 gggaaagggcatgtcttcaacctgctttctttg 573
           |||||||||||||||||||||||||||||||||
Sbjct: 233 gggaaagggcatgtcttcaacctgctttctttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 573
Length of database: 973
Length adjustment: 10
Effective length of query: 563
Effective length of database: 963
Effective search space:   542169
Effective search space used:   542169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)