BAC Information

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BAC

Clone NameMSMg01-095A18
Chromosome2 (Build37)
Map Location 169,130,269 - 169,272,253
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC668952, Nfatc2, Atp9a, Sall4, Zfp64, LOC100043909
Downstream geneEG668954, Tshz2, LOC100043737, LOC100043910, Zfp217, Silg111, LOC100043739, Bcas1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095A18.T7 (MSMg01no095_a18.b1)MSMg01-095A18.TJ (MSMg01no095_a18.g1)
ACCAG312055AG312056
length715718
length of high quality
(start - end)		645 (40 - 684)293 (73 - 365)
definitionCHROMAT_FILE: MSMg01no095_a18.b1 PHD_FILE: MSMg01no095_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:56 2005CHROMAT_FILE: MSMg01no095_a18.g1 PHD_FILE: MSMg01no095_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:50:56 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(169,271,703 - 169,272,253)(169,130,269 - 169,130,560)
sequence
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATT
CAAGGATCACACACGAGGTGATAGATGGAAGACTGGAAGGTACCTTGAAC
CCTTGACCATCAGCAAACTACTGTCCCAACCTGGATCTCTGCACATAAGC
AACACGTCTCAATACTGAGTTTCCCTCTAGAAGTTTCTTCTCCAGTTTCC
ACCCAAGTCAATTCTCACATCAACATGTTTCAGTCAACCAGGGCATAATC
CAATCTAGTACTTCATCATCAGAGTCTCAGAAAAATGAACCGACATTCTG
TTGCCATCGTTAGAGGCCAGGTATGCTAGAGAAGAAGTCAAGAAACAAGT
ACTTTATATTTACTTAGTCAATCACTTTGGTTTGTTTCCCTGTAGCCCCA
GCTAGCCTTGAATCCCTGATTCTCCGTCTTCCGTCTCCCAAGTGCTGGGA
TAAGGGCAGGCATGTTATCATTGCACCCTGCTAAGTCAAAGCTGTTCTTG
AACTGACCCTTCTGTCTCCATCTCCCAAGAGCTCCCTGTATAGGCGTGCC
TCATCCCTCCATGAGAAGTAATGCATCCTTTTCAAAAGGGTGGAGGGATA
CTCCCTTGATGGCTAAAAATGTTGGAGGTGAGGTGAGATTTTCATCTTTG
ATTAGATTCGATATGAGTAAATAATGAATGAGAAAGAGAGCTCCAGCAAG
ACTGCCGTTGGAGCA

CGATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTTGCACACAGCTCTCTTCACTTCTGA
TTCTCAAGATTACCTGCTCCCTTCCTGTTCCCTTCGGATCAGAGGATGTT
AACAGTCCCTTTGAATGGTATAGTGCTTTCGGCAAACTTCCTCAGGGTGA
CACTGACTATACAGTGCTTTGCTGTGGTCTTTTGTGGGATCCCTTGAGAA
TTATGAATGGGTGCCTAGCTTCTGACTGCATCCTGCTCTTTAGCAAAGTG
CTCGCCTTCGCTCCTCTTTCTAAGCTTCTCAGAGTCACTTTTGTTTGGTA
CTGGATCCAGTGCATTATTTCTCACCTTCATTGGTTGTGACTGACCCCGG
ATCCAGTGCAGCAGTTCTCAACTTGATTGATCGTGACTGACCCCTTTGAG
ATCGTAAGACTCTTTCACAGGGGTGGCCTGACACCATTGAAAACACAGAT
GTTTACATTGCGATTTATAACAGCAGCAAGCTTACAGTTATGAAGAAGCA
ACAGAAATAATTTTATGGTTGGGGGATAAATGTATTAAAGGGTCGCAGCG
TTAGAAAGGTTGAAAACCACTAGTCTAGTGGACGGAAGTGACAGGCAAGG
GGCTCTCTATCAGGAGAGGTATGCTGGGAGACCTTCCCGTCAGGATATCT
CACTCCGAAGTATTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_a18.b1 MSMg01no095_a18.b1 CHROMAT_FILE:
MSMg01no095_a18.b1 PHD_FILE: MSMg01no095_a18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:56 2005
         (645 letters)



>mm_chr2_169271703_169272747
          Length = 1045

 Score = 1042 bits (539), Expect = 0.0
 Identities = 548/551 (99%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcaaggatcacacacgaggtgatagatggaagactggaaggtaccttgaacccttg 66
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 551 gaattcaaggatcacacaagaggtgatagatggaagactggaaggtaccttgaacccttg 492

                                                                       
Query: 67  accatcagcaaactactgtcccaacctggatctctgcacataagcaacacgtctcaatac 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 accatcagcaaactactgtcccaacctggatctctgcacataagcaacacgtctcaatac 432

                                                                       
Query: 127 tgagtttccctctagaagtttcttctccagtttccacccaagtcaattctcacatcaaca 186
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 tgaatttccctctagaagtttcttctccagtttccacccaagtcaattctcacatcaaca 372

                                                                       
Query: 187 tgtttcagtcaaccagggcataatccaatctagtacttcatcatcagagtctcagaaaaa 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 tgtttcagtcaaccagggcataatccaatctagtacttcatcatcagagtctcagaaaaa 312

                                                                       
Query: 247 tgaaccgacattctgttgccatcgttagaggccaggtatgctagagaagaagtcaagaaa 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 tgaaccgacattctgttgccatcgttagaggccaggtatgctagagaagaagtcaagaaa 252

                                                                       
Query: 307 caagtactttatatttacttagtcaatcactttggtttgtttccctgtagccccagctag 366
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 251 caagtactttatatttacttagtcaatcagtttggtttgtttccctgtagccccagctag 192

                                                                       
Query: 367 ccttgaatccctgattctccgtcttccgtctcccaagtgctgggataagggcaggcatgt 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 191 ccttgaatccctgattctccgtcttccgtctcccaagtgctgggataagggcaggcatgt 132

                                                                       
Query: 427 tatcattgcaccctgctaagtcaaagctgttcttgaactgacccttctgtctccatctcc 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 tatcattgcaccctgctaagtcaaagctgttcttgaactgacccttctgtctccatctcc 72

                                                                       
Query: 487 caagagctccctgtataggcgtgcctcatccctccatgagaagtaatgcatccttttcaa 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  caagagctccctgtataggcgtgcctcatccctccatgagaagtaatgcatccttttcaa 12

                      
Query: 547 aagggtggagg 557
           |||||||||||
Sbjct: 11  aagggtggagg 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no095_a18.g1 MSMg01no095_a18.g1 CHROMAT_FILE:
MSMg01no095_a18.g1 PHD_FILE: MSMg01no095_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:50:56 2005
         (293 letters)



>mm_chr2_169130069_169130761
          Length = 693

 Score =  534 bits (276), Expect = e-156
 Identities = 288/292 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttttgcacacagctctcttcacttctgattctcaagattacctgctcccttcctgttccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttttgcacacagctctcttcacttctgattctcaagattacctgctcccttcctgttccc 260

                                                                       
Query: 61  ttcggatcagaggatgttaacagtccctttgaatggtatagtgctttcggcaaacttcct 120
           ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 261 ttcggatcagaggatgttaacagccccttcgaatggtatagtgctttcggcaaacttcct 320

                                                                       
Query: 121 cagggtgacactgactatacagtgctttgctgtggtcttttgtgggatcccttgagaatt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagggtgacactgactatacagtgctttgctgtggtcttttgtgggatcccttgagaatt 380

                                                                       
Query: 181 atgaatgggtgcctagcttctgactgcatcctgctctttagcaaagtgctcgccttcgct 240
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 381 atgaatgggtgcctagcttctgactgcatcccgctctttagcaaagtgctcgccttcgct 440

                                                               
Query: 241 cctctttctaagcttctcagagtcacttttgtttggtactggatccagtgca 292
           || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 cccctttctaagcttctcagagtcacttttgtttggtactggatccagtgca 492


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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