BAC Information

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BAC

Clone NameMSMg01-095D18
Chromosome2 (Build37)
Map Location 81,367,542 - 81,367,860
singlet/doubletsinglet
Overlap genenone
Upstream geneNckap1, LOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
Downstream geneLOC100040704, Zfp804a, LOC100041308, A130030D18Rik, EG624362, LOC433550
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095D18.T7 (MSMg01no095_d18.b1)MSMg01-095D18.TJ (MSMg01no095_d18.g1)
ACCAG312197AG312198
length694697
length of high quality
(start - end)
322 (40 - 361)299 (73 - 371)
definitionCHROMAT_FILE: MSMg01no095_d18.b1 PHD_FILE: MSMg01no095_d18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:11 2005CHROMAT_FILE: MSMg01no095_d18.g1 PHD_FILE: MSMg01no095_d18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATT
CAGACCTGTGCCTGATATAGAAATTACTGGTTCTGGGAATTCAATCCAAG
GCTTCCCGCTAGTTCAGCGAGCATTCTTCCAGCTGAGCTATATCCCCTGC
CTGCCAGGGTTTTATTTCCCCCATTCTTTGCTGACTTCCTGTGGAATAGC
AAAATGAATCCATCACCCCAAGTAACTCCCTGGAAGTAGAAATCTTAATA
ATCTTTCATGCAAGTATTATGGAAATGACTTTAAGATATACATGGAAATT
CAAAGTGATTTAAATAGCCAAGTTTTTCAATCATGAACATGCTATCTAAG
TCTGCATTAAGCCAGATACAAAGATTCAACTTCGCTTAGAAATATTTGGA
TAGGGATTATGTTCTTTGAAGAATTTTAATGGCACAGAAATGCTGCATTG
TAAGCACCCATTTATGTTAGCGCTTTTGTTTTGTTTTCTTTTCAAATAAG
CTAAGTTGTTGGAATGCTGGTTGGAGCCTTTGATTCGAAGCTGTCAGACA
TTTCCCCTGACTCCAGGTCTTTTGGGAACTGTCAATAAAACAGCCCTGGT
GACCGATGGAGGTCATAAAAAAGGATCTTATCTTCAATACTTCTTTGTTA
CTGTTAGCATACTAAACTTAATCTTAAATTCATAAACTTAATAC
AATGAAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTAAAGGAGAGTTATACCATTGCATGGAC
CAGTTTCTGGATTGCATCAAACAGAAAAAGCTGGCAAAAGATAATCTTTC
ATTTCTTCCTTATTCCTGGATGGGTGATAAAATATGACCAACTGTTCTAA
AATCCTGTCATTATTACTTTTTTCCATAATGGACTGTACTTCAAACAATT
ATCTTAAATAAAGTCCTAAGTCTTTAAGTTTCTTTTGCTAGGATATTTTA
TTAAGACAAGAGGAAAAGGTAATTCAAAGGTCAGTTGTATATTTTTGGAC
TTTTAAAATATATCTCATTCAACAACCACATTTATTTGTAGAGGTGATAC
ATAGTAGACTTCTGTTATTCACACTGAGTGTATTTCAAATGCATTGTCTT
TAAAAGCTAATGTCCTGGAAAGAGATGGGTCAGTGAAGATGAATGGCAGC
TTGTGCTGATTTGAATGAGAATTGGACCCATAGTATCAGATATTTGAGTA
TTTGGTCCACAGGTGGTGGAATTGTTTGAGAAAGATCAGTAGGTATGGGC
TTGCTGAGCATGAAGCATCACTGGGAACCAGCTTTTGAGTTTCAAGAGCC
CACACCATTCCTAGTCTTTTCTGCTCTACCTCACATTTGTGTCTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_d18.b1 MSMg01no095_d18.b1 CHROMAT_FILE:
MSMg01no095_d18.b1 PHD_FILE: MSMg01no095_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:11 2005
         (322 letters)



>mm_chr2_81367230_81367951
          Length = 722

 Score =  601 bits (311), Expect = e-176
 Identities = 317/319 (99%), Gaps = 2/319 (0%)
 Strand = Plus / Minus

                                                                       
Query: 6   ggaattcagacctgtgcc-tgatatagaaattac-tggttctgggaattcaatccaaggc 63
           |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||
Sbjct: 631 ggaattcagacctgtgccatgatatagaaattacatggttctgggaattcaatccaaggc 572

                                                                       
Query: 64  ttcccgctagttcagcgagcattcttccagctgagctatatcccctgcctgccagggttt 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 ttcccgctagttcagcgagcattcttccagctgagctatatcccctgcctgccagggttt 512

                                                                       
Query: 124 tatttcccccattctttgctgacttcctgtggaatagcaaaatgaatccatcaccccaag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 511 tatttcccccattctttgctgacttcctgtggaatagcaaaatgaatccatcaccccaag 452

                                                                       
Query: 184 taactccctggaagtagaaatcttaataatctttcatgcaagtattatggaaatgacttt 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 taactccctggaagtagaaatcttaataatctttcatgcaagtattatggaaatgacttt 392

                                                                       
Query: 244 aagatatacatggaaattcaaagtgatttaaatagccaagtttttcaatcatgaacatgc 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 aagatatacatggaaattcaaagtgatttaaatagccaagtttttcaatcatgaacatgc 332

                              
Query: 304 tatctaagtctgcattaag 322
           |||||||||||||||||||
Sbjct: 331 tatctaagtctgcattaag 313


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)