BAC Information

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BAC

Clone NameMSMg01-095G08
Chromosome2 (Build37)
Map Location 42,449,829 - 42,450,123
singlet/doubletsinglet
Overlap geneLrp1b
Upstream geneLOC625094
Downstream geneLOC100041228, LOC100041245, Kynu
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095G08.T7 (MSMg01no095_g08.b1)MSMg01-095G08.TJ (MSMg01no095_g08.g1)
ACCAG312320AG312321
length700705
length of high quality
(start - end)
635 (39 - 673)294 (74 - 367)
definitionCHROMAT_FILE: MSMg01no095_g08.b1 PHD_FILE: MSMg01no095_g08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:24 2005CHROMAT_FILE: MSMg01no095_g08.g1 PHD_FILE: MSMg01no095_g08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:24 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATT
CTCAACTGAGCAATCTTGAATGGCGAGAAGACCTAAAGAAACATTCAACA
TCCTTAATCATCAGGGAAATGCAATCAGAATGACATTGCTATTCCACCTC
ACAGTAGTAAGAATGGCTAAGATCAAAAACTCAGATGACAGCAGATGTGG
AGAAAGAGGAACACTCCTCCACTGCTGGTGGGATTACAAGCTGGTACAAT
CACTCTGAAAATCAGCCTGCCTATTCCTCAGAAAACTGAAAATAGTTTTC
TTGAGGACCAAGCCATACCACTCCTCGACATATACCCAAAGATTCTCCAA
CATATAATAAGAACACATGATCTACGATGTTTATAGCAACCTTATTTATA
ATAGCCAGAAGCTGTAAAGAACCCAGATGTCCTTCAACAGAGGAACAGAT
CAAGAAAATGTGGTACATTTACACACTGGACTACTATTCAGATATTAAAA
ACAATGACATCAAAAAATTCTCAGGAAGATGATGGAACTTGAAAATATCA
TCCTGAGTGTCATAACCTGTTGTGTCCGGCCAGCAGCTCACATGTCTGGG
TTCTAGTCTGGAAAGGCATCTTGGAAACCTGGAAGAGAAGAGGGAGCTAG
GTGGATGAGAGAAAGATGTAGCTAAGACAAAATTCTGATCAAAGCTCAAT

CAATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCAAGGAAGCCACGGTTGCATTGTGAAA
TCTTGTGTCAAGAAGCAGAAAGCAAAACTATACAAAAAATGAAAGTTTCA
ATACCGTGTGCTATGAGCGATTTACTCTGCTATAGCTAATAATAGATTAA
TATTTGTCATGCCTCATAAAATAACATCAATGAGACTACACTTACGTATC
AAAATTATCTAACGAGAGTTACTAGCATGAACCATTAAGAAATGAATTAT
AACCTTTCTAGAAGTAGCTAAACATATATGTCTAGATTTAAGAAGTACTG
GTGAAAATATTCATAAAATTTACATATCTAATGTGAAGAACTGGACAAAA
AATATATTTCAAAAACATATAATACAACCTCAGTTATCTTTCAGTAACTT
AGGGAATCTTTCAGTAACTAAAAACTTCTATGATTGTGGGTTTGCTTGCC
ATGTCAAAATCAGATGTACCAAAAGCTGAACTTAAAATTTTTTCCATGCT
TTGTTATGAAATTAACTTGACTTTGTGTGTGATGGCTTCATACACTACAT
ATTTCTATTCATTTTTACATCTTCTCATCTTCTTGCCCAGTTATAGAGAT
AAAAAAATCAGATCCTTCTGCATGCTAAGAAAAAAACACTGTACTACAGA
CTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_g08.g1 MSMg01no095_g08.g1 CHROMAT_FILE:
MSMg01no095_g08.g1 PHD_FILE: MSMg01no095_g08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:24 2005
         (294 letters)



>mm_chr2_42449629_42450323
          Length = 695

 Score =  547 bits (283), Expect = e-160
 Identities = 292/295 (98%), Gaps = 1/295 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   caaggaagccacggttgcattgtgaaatcttgtgtcaagaagcagaaagcaaaactatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caaggaagccacggttgcattgtgaaatcttgtgtcaagaagcagaaagcaaaactatac 260

                                                                       
Query: 61  aaaaaatgaaa-gtttcaataccgtgtgctatgagcgatttactctgctatagctaataa 119
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaaatgaaaagtttcaataccgtgtgctatgagcgatttactctgctatagctaataa 320

                                                                       
Query: 120 tagattaatatttgtcatgcctcataaaataacatcaatgagactacacttacgtatcaa 179
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagactaatatttgtcatgcctcataaaataacatcaatgagactacacttacgtatcaa 380

                                                                       
Query: 180 aattatctaacgagagttactagcatgaaccattaagaaatgaattataacctttctaga 239
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aattatctaatgagagttactagcatgaaccattaagaaatgaattataacctttctaga 440

                                                                  
Query: 240 agtagctaaacatatatgtctagatttaagaagtactggtgaaaatattcataaa 294
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agtagctaaacatatatgtctagatttaagaagtactggtgaaaatattcataaa 495


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 294
Length of database: 695
Length adjustment: 9
Effective length of query: 285
Effective length of database: 686
Effective search space:   195510
Effective search space used:   195510
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)