BAC Information

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BAC

Clone NameMSMg01-095H05
Chromosome2 (Build37)
Map Location 133,231,749 - 133,375,989
singlet/doubletdoublet
Overlap geneA430048G15Rik
Upstream gene1700026D11Rik, Prei4, LOC100043781, LOC383801, LOC668906, Chgb, 3300001M20Rik, Mcm8, Crls1, B430119L13Rik, 5830467P10Rik, LOC668908, LOC100043785
Downstream geneBmp2, Hao1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095H05.T7 (MSMg01no095_h05.b1)MSMg01-095H05.TJ (MSMg01no095_h05.g1)
ACCAG312360AG312361
length678694
length of high quality
(start - end)
601 (33 - 633)577 (72 - 648)
definitionCHROMAT_FILE: MSMg01no095_h05.b1 PHD_FILE: MSMg01no095_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:28 2005CHROMAT_FILE: MSMg01no095_h05.g1 PHD_FILE: MSMg01no095_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(133,375,395 - 133,375,989)(133,231,749 - 133,232,325)
sequence
GCGGCCGCTATACGACTCCTATTCGGAGAGGATCCGCGGAATTCTCTGTT
CTTCGGAATACAGTGTAGATGGTCATGTTCAGTCCATTTTTCATGCAATT
GAAATTGTAGACAAGAAACAAATACAGAGACTTATTGCTTTTTACACTCT
ATGCTGGTGGCCTCCTCCCACCCACAACAAATAATGTGTGGTTACTTAAT
ACTTTCAGGGGGTAGTATCTGTCTTCTCTGAAAATGTACGGTGCTTGCGG
ACTTGCTCGATCTTACCATTAACAAAGTTTTTCTCAGTATCTGCCAGTTC
AGAAGGCGAGAGTAGCTCTGGAGTAGCTCTGAATTTATCCTATTTAGCGT
CTCTGTTAACAAATATGTAAGGGGTTTCCAGTGGCCAGGCCGTCCTGGGG
CAAGCTAAGGTGAGAATTACAAGTCTGATCTTTGTAAGAAGGTCCAGACA
CAATGTATCAGAACACAGTCTACTGGTTAGGACTCTACATAAAGGAGGCT
GCTGCTATTCTATTCTAGTCCGTTTTTTGCCAGGTTTTCAGGAGATATCG
GAAATCCTCATTTGTGTGTGGACATGACCTGGGATGAAATTAAGTACTTA
AAGAGTCATACTTTGGCAACTTTTCCTTGAGCAGTTCAGCCCAGATAATG
TTTAATTTTATTGCATCCTGCAGCTATA
GATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAACTTCAGGCCTTCGTTTGCATGGACATG
CACGTGCATAGAAGTGCTACCAAGCAATGAGGACTGAGGTGAGGAGATTC
ACTCTATCCAGAGAGATGTCTCAGTCAGTAGGGACACCAGCCCTCTTAAT
AGAAGACAACACAGAACAAGATGCTCTGGATAGGTTAGGACATGGTTGTT
TACCTTCAACTTGCCAATTTTAAGGCTAATTCAAACAATAATTTTGAAAG
GGTGCTACAAAGACTAGTCAATACCTACAATGGGCTTGGAGCTGGAGCAC
TGGCTGCCATTTTCTGATTTCTATTCATAAAGGGCAAACCTTTGGACAGT
GGTGGGGGAGCTGTAGAAATACCAGCAGCATGAACAGCATAAGTTAAATT
ATACATAGTATACATACAAAGGGGACTTTCCCATTCCTCCTTCTAATATT
TTAGAAACCCTTTTCAATGAATGGAAATATAACCAGCAAGCATCCACAGA
GGAGGTGATGCCTGACGTCCGACGTGGACACCTAAGAACTCCTAGAGTCG
TCCTCGAACAAAAGCAGAGCATAGAATACACCTCCCAACACGGCTCAGAG
AAATAAGTAGCTCAGTGAGACACCGTAAAGAGCATTCCTTGGAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_h05.b1 MSMg01no095_h05.b1 CHROMAT_FILE:
MSMg01no095_h05.b1 PHD_FILE: MSMg01no095_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:28 2005
         (601 letters)



>mm_chr2_133375189_133376189
          Length = 1001

 Score = 1104 bits (571), Expect = 0.0
 Identities = 589/595 (98%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattctctgttcttcggaatacagtgtagatggtcatgttcagtccatttttcatgcaa 66
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 801 gaattctctgttctttggaatacagtgtagatggtcatgttcagtccatttttcatgcaa 742

                                                                       
Query: 67  ttgaaattgtagacaagaaacaaatacagagacttattgctttttacactctatgctggt 126
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 ttgaaattgtagagaagaaacaaatacagagacttattgctttttacactctatgctggt 682

                                                                       
Query: 127 ggcctcctcccacccacaacaaataatgtgtggttacttaatactttcagggggtagtat 186
           ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct: 681 ggcctcctcccacccacaacaaataatgtgtggttacttaatactttgagggggtactat 622

                                                                       
Query: 187 ctgtcttctctgaaaatgtacggtgcttgcggacttgctcgatcttaccattaacaaagt 246
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctgtcttctctgaaaatgtacagtgcttgcggacttgctcgatcttaccattaacaaagt 562

                                                                       
Query: 247 ttttctcagtatctgccagttcagaaggcgagagtagctctggagtagctctgaatttat 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ttttctcagtatctgccagttcagaaggcgagagtagctctggagtagctctgaatttat 502

                                                                       
Query: 307 cctatttagcgtctctgttaacaaatatgtaaggggtttccagtggccaggccgtcctgg 366
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 501 cctatttagcgtctctgttaacaaatatgtaaggggtttccagtggccaggcagtcctgg 442

                                                                       
Query: 367 ggcaagctaaggtgagaattacaagtctgatctttgtaagaaggtccagacacaatgtat 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ggcaagctaaggtgagaattacaagtctgatctttgtaagaaggtccagacacaatgtat 382

                                                                       
Query: 427 cagaacacagtctactggttaggactctacataaaggaggctgctgctattctattctag 486
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagaacacagtctactggttaggactctacataaaggaggctgctgctattctattctag 322

                                                                       
Query: 487 tccgttttttgccaggttttcaggagatatcggaaatcctcatttgtgtgtggacatgac 546
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tccgttttttgccaggttttcaggagatatcggaaatcctcatttgtgtgtggacatgac 262

                                                                  
Query: 547 ctgggatgaaattaagtacttaaagagtcatactttggcaacttttccttgagca 601
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgggatgaaattaagtacttaaagagtcatactttggcaacttttccttgagca 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 601
Length of database: 1001
Length adjustment: 10
Effective length of query: 591
Effective length of database: 991
Effective search space:   585681
Effective search space used:   585681
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no095_h05.g1 MSMg01no095_h05.g1 CHROMAT_FILE:
MSMg01no095_h05.g1 PHD_FILE: MSMg01no095_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:28 2005
         (577 letters)



>mm_chr2_133231549_133232525
          Length = 977

 Score = 1077 bits (557), Expect = 0.0
 Identities = 572/577 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   aacttcaggccttcgtttgcatggacatgcacgtgcatagaagtgctaccaagcaatgag 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 aacttcaggccttcgtttgcatggacatgcacgtgcatagaagtgctaacaagcaatgag 260

                                                                       
Query: 61  gactgaggtgaggagattcactctatccagagagatgtctcagtcagtagggacaccagc 120
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gactgagctgaggagattcactctatccagagagatgtctcagtcagtagggacaccagc 320

                                                                       
Query: 121 cctcttaatagaagacaacacagaacaagatgctctggataggttaggacatggttgttt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cctcttaatagaagacaacacagaacaagatgctctggataggttaggacatggttgttt 380

                                                                       
Query: 181 accttcaacttgccaattttaaggctaattcaaacaataattttgaaagggtgctacaaa 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acctccaacttgccaattttaaggctaattcaaacaataattttgaaagggtgctacaaa 440

                                                                       
Query: 241 gactagtcaatacctacaatgggcttggagctggagcactggctgccattttctgatttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gactagtcaatacctacaatgggcttggagctggagcactggctgccattttctgatttc 500

                                                                       
Query: 301 tattcataaagggcaaacctttggacagtggtgggggagctgtagaaataccagcagcat 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattcataaagggcaaacctttggacagtggtgggggagctgtagaaataccagcagcat 560

                                                                       
Query: 361 gaacagcataagttaaattatacatagtatacatacaaaggggactttcccattcctcct 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gaacagcataagttaaattatacatagtatacatacaaaggggactttcccattcctcct 620

                                                                       
Query: 421 tctaatattttagaaacccttttcaatgaatggaaatataaccagcaagcatccacagag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tctaatattttagaaacccttttcaatgaatggaaatataaccagcaagcatccacagag 680

                                                                       
Query: 481 gaggtgatgcctgacgtccgacgtggacacctaagaactcctagagtcgtcctcgaacaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaggtgatgcctgacgtccgacgtggacacctaagaactcctagagtcgtcctcgaacaa 740

                                                
Query: 541 aagcagagcatagaatacacctcccaacacggctcag 577
           ||||||||| ||||| |||||||||||||||||||||
Sbjct: 741 aagcagagcgtagaaaacacctcccaacacggctcag 777


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 577
Length of database: 977
Length adjustment: 10
Effective length of query: 567
Effective length of database: 967
Effective search space:   548289
Effective search space used:   548289
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)