BAC Information

Click to search

BAC

Clone NameMSMg01-095I21
Chromosome2 (Build37)
Map Location 92,970,536 - 92,970,759
singlet/doubletsinglet
Overlap genenone
Upstream genePhf21a, Gyltl1b, Pex16, 1700029I15Rik, Mapk8ip1, Cry2, Slc35c1, LOC100042775, LOC100043205, Chst1, Syt13, LOC100042784
Downstream geneTrp53i11, C230071H18Rik, Tspan18, LOC100042789, LOC639658, Cd82, Alx4, Ext2, 2610203E10Rik, Gm1967, Gm1335, LOC620695, Alkbh3, Hsd17b12
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095I21.T7 (MSMg01no095_i21.b1)MSMg01-095I21.TJ (MSMg01no095_i21.g1)
ACCAG312440AG312441
length672817
length of high quality
(start - end)
226 (90 - 315)35 (133 - 167)
definitionCHROMAT_FILE: MSMg01no095_i21.b1 PHD_FILE: MSMg01no095_i21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:36 2005CHROMAT_FILE: MSMg01no095_i21.g1 PHD_FILE: MSMg01no095_i21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:37 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAGATCCGCGGAATTCTCCCCTACCATTTCTCCCTCTCCCCCTCCCCCTC
CCTCCCCCTCCCTCTCTCTCAGACTAGTATCCAATCTCAAGATTCACTTG
CCCCTGTCTCCTGAGTGCTAGGACTAAAGGCATGGCTACCACCGCCTGGT
TCCAATTTTGTAAGCCTAAGAAATCAGTGAAGGTATGTGAGACCATAGAG
GAAGAAGATTCCGAGTGGGCAGTGATGCCCTTAACACCAGGGAAGGATGG
TGACCATGCCAAGAAAGAATGCATGGAGTTGCTTGGCTCTGAGGCTGGGG
CTTGCTGTCTGCAATGTTTCTGTAGGCCTCGCCCCACGGCACTGCATTGC
TTTTTTTTGTTGTTGCTGCTGGACTACACACTATAGAACTTGTATAAGAA
AGAGTTTGTTTTGGCTTACAGTCTCAGAGGGTTCATATCCATAATGGCAG
GGCACATGCATCAGGCAGCAGCTCACAACTTGAACCACAGCATGATACAC
ATCCATCGATTGATAGATTGATAGATAGATAGATAGATAGATACATATGA
TAGATCTCTTTCTTGTCTCCCCACCCCCTACTCTACTCACTTTTTTCTCC
CCCCCCTTCTCTTTTTCTTACTTTCTATATTTTAGACCCTTCTCTATCTT
ATCTTTCCTCCCCATCTTCTTC
TTTTTTNNNNNNNNNNNNNNCCCNNNNNNNTTNNCCNCNNNNAACCTCAA
AGTNNACCTCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCAATCCGGGATAG
ATGAAACTGTGTCTCACAAAGGGTTCGCGCCGCCGACTGGCAGATAGCTC
AGCTGATAAGACGTTTGCTTTGCAAGTATGAGGACTTAAGTTTCAATCTC
CAGAATTCACATTTAAAAACAACCAAAAAAAAAAGAAAAAAAAATAAAGC
TCTGTTGTTGTGGCAGGCACTTGCAATCCCAGTGCCTGGGACGGTGGGTT
CAGTTAGACCCCTGAGGTGCACTGACCTTTCTGCCTAACACATTTTTCAC
GCTCCAGGCCCATGAGATTTTTTTTTTTCCCCCCCCCCCCCCCTGGGTGA
TGACTCTTGTGTCCAATTCTCTATCCCGCCCGCCAAAAAAAAAAAAAAAA
TTGGGGGGGGGGGGGGGATATTCATGTTTATTTACTATGCTCTTTTTCTT
CACCCTTATCCCTCTTTCTTTCTTTTTTATCTCTTTTCCCCCCCCCCCTT
TCTCTCCCCCCGCTGCGTTCGATTTAATATTCTCCTTTCGCCCTTTTCGT
CTTTTTTATATTTCTCCCCTCCCCTCTTCCCTCTTATTCCGGCATCTTTA
TCTACTCCCCCGCTGGTCGGCCCTCCGATTCTCTCACCTTTTTTTATTCG
TTTTACTATAACCTTCTCCTCCCTTCTATTTATTACTCCTTCCGCACATT
CCTTCTTATGTTTCTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_i21.b1 MSMg01no095_i21.b1 CHROMAT_FILE:
MSMg01no095_i21.b1 PHD_FILE: MSMg01no095_i21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:36 2005
         (226 letters)



>mm_chr2_92970274_92970897
          Length = 624

 Score =  387 bits (200), Expect = e-112
 Identities = 219/226 (96%), Gaps = 2/226 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   agattcacttgcccctgtctcctgagtgctaggactaaaggcatggctaccaccgcctgg 60
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 agattcacctgcccctgtctcctgagtgctaggactaaaggcatggctaccaccgcctgg 427

                                                                       
Query: 61  ttccaattttgtaagcctaagaaatcagtgaaggtatgtgagaccatagaggaagaagat 120
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 ctccaattttgtaagcctaagaaatcagtgaaggtatgtgagaccatagaggaagaagat 367

                                                                       
Query: 121 tccgagtgggcagtgatgcccttaacaccagggaaggatggtgaccatgccaagaaagaa 180
           ||||||||||||  |||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct: 366 tccgagtgggca--gatgtccttaacaccagggaaggatggtgaccatgccaagaaggaa 309

                                                         
Query: 181 tgcatggagttgcttggctctgaggctggggcttgctgtctgcaat 226
           |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 tgcacggagttgcttggctctgaggctggggcttgctgtctgcaat 263


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 226
Length of database: 624
Length adjustment: 9
Effective length of query: 217
Effective length of database: 615
Effective search space:   133455
Effective search space used:   133455
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)