Query= MSMg01no095_j05.b1 MSMg01no095_j05.b1 CHROMAT_FILE:
MSMg01no095_j05.b1 PHD_FILE: MSMg01no095_j05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:38 2005
(580 letters)
>mm_chr2_93923781_93924761
Length = 981
Score = 876 bits (453), Expect = 0.0
Identities = 486/501 (97%), Gaps = 9/501 (1%)
Strand = Plus / Minus
Query: 81 atttgtgaagtgcctcctgtacccgtggtcatcacctgagcctaagcctaagctgggtaa 140
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 981 atttgtgaagtgcctcctgtacccgtggtcatcacctgagcctaaacctaagctgggtaa 922
Query: 141 tagttacttcattgtcacaagaacatgctgaggcttctacatgatgtctgtcttgctcgt 200
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 921 tagttacttcgttgtcacaagaacatgctgaggcttctacatgatgtctgtcttgctcat 862
Query: 201 ggccattctataaagaaggatgaaaatgagattagcacctatgtctgggtgacctcaaat 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 861 ggccattctataaagaaggatgaaaatgagattagcacctatgtctgggtgacctcaaat 802
Query: 261 cccacacttttcaaagggtttggatcatgaaggtggaagtggccattgtatgctgaccgt 320
|||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 801 cccacacttttcaaaggg--tg------gaaggtggaagtggccattgtatgctgaccgt 750
Query: 321 gtagagagtgcctcccccggttctt-cctcagaagctcttacttccctccccagctcttt 379
| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 749 ggagagagtggctcccccggttcttccctcagaagctcttacttccctccccagctcttt 690
Query: 380 ggaccttaatagtcttgagaaaaggagagcatcaaggtctttcccatgtcactttgtgta 439
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 ggaccttaatagtcttgagaaaaggagagcatcaaggtctttcccatgtcactttgtgta 630
Query: 440 tttattactgtgcactttgtgtggctctttaaatgcagtgacttaactgttaaccaggct 499
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 tttattactgtgcactttgtgtggctctttaaatgcagtgacttaactgttaaccaggct 570
Query: 500 agaaactgcagtgagatcacattccacattcatttttaccacgatgaattttgtttcttt 559
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 569 agaaactgcagtgagatcacattccacattcatttttaccatgatgaattttgtttcttt 510
Query: 560 taatgtatcacacactttaca 580
|||||||||||||||||||||
Sbjct: 509 taatgtatcacacactttaca 489
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 580
Length of database: 981
Length adjustment: 10
Effective length of query: 570
Effective length of database: 971
Effective search space: 553470
Effective search space used: 553470
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no095_j05.g1 MSMg01no095_j05.g1 CHROMAT_FILE:
MSMg01no095_j05.g1 PHD_FILE: MSMg01no095_j05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:38 2005
(496 letters)
>mm_chr2_93783047_93783942
Length = 896
Score = 882 bits (456), Expect = 0.0
Identities = 486/496 (97%)
Strand = Plus / Plus
Query: 1 ctaaccctgaaggctctcagtgagtctgaagtctccgttcacattccttgcttaaatgga 60
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 201 ctaaccctgaaggctctcagtgagtctgaagtctccgttcacattccttggttaaatgga 260
Query: 61 aacatcctaagctgaagtcttaggtttaaacagccctccagaggttttggtaaaagtgcg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 261 aacatcctaagctgaagtcttaggtttaaacagccctccagaggttttggtaaaaatgcg 320
Query: 121 gaagcagctagaagctaattccttcctcatttcctggaagagcaaaatgcacaaaagtaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagcagctagaagctaattccttcctcatttcctggaagagcaaaatgcacaaaagtaa 380
Query: 181 acagaacaacaaactcaagttccatcctgtaagcccgagactcaagcacagaaagactgg 240
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct: 381 acagaacaacaaactcaagttccatcctgtaagcccaagactcaagcacggaaagactgg 440
Query: 241 agcgagcgagagctcaccggaaagacatgatgatgaaattattatgcacacaggtaatta 300
||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 agcaaatgagagctcaccggaaagacatgatgatgaaattattatgcacacaggtaatta 500
Query: 301 tttggcgcagagaatgaagggcagagattatagcaagctagcccaggagcagccaattaa 360
||||| |||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 501 tttggggcagagaatgaagggcagagattatagcaagctagcccaggagcggacaattaa 560
Query: 361 aacaaaaacaaacagataaaaacccaccagcgaacaggcctatggctgggcagttactca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aacaaaaacaaacagataaaaacccaccagcgaacaggcctatggctgggcagttactca 620
Query: 421 ccagcagctctggctcccgcattcctggcattttgatttctatagttccaggggctgggg 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ccagcagctctggctcccgcattcctggcattttgatttctatagttccaggggctgggg 680
Query: 481 gtggggtcccatgcac 496
||||||||||||||||
Sbjct: 681 gtggggtcccatgcac 696
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 496
Length of database: 896
Length adjustment: 10
Effective length of query: 486
Effective length of database: 886
Effective search space: 430596
Effective search space used: 430596
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
