CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATCCGCGGAATTC
TGGTTACAGAAAATTGGTAACTTGTCCATAGAACAACTACCATGTTCTTG
TACCTGATACTTGTCCTTCGTTTCCTATGGTTTAAATAGCATGAAAAGTA
CTTGTTTGACAGTATGTCTCAATGGGTAAGAGTATTTGTCAAGTCTACTG
AATTGAATTTGATCCCTGAATCCCATGTAAAGATAGACAGAAAGAACACA
CTACATACAGTTGTCCTCTGACCTCTATACACACATCAAGGCATTGGTCT
CTTGAACCAACATGTGTGTGCAGGGACTCACACACGTACACACACACACA
CACACACACACACACACACACCCTCTCCCCCACCAACACACATGAAAAGA
AATATTAAAGGATCCAAAAGATACACAGCCATTAGGCAATCACCTCTGGG
GATTCTTCGGATGGCCTTTATTACTAAAGATAGAATTAGTAAAGCCAACT
AATAAAATACTAAGCATTTGATGCATTATTAGGGGATACAGTCTCTATAT
ATGAAAAAATTCTTCTACGAGTATTTCTTGAGCCAGAGTCTCTGTAGACT
CTAAGTTTAAATCTGATCGTAATATAATATATGCCTCCTGTAGATGGAGA
AGATGTTCCTAGTCACATTGGTACAGCTCCTTTGGATCATGATT

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAAAGGCTGAG
AAGCACCTGAAAAAATGTTCAGCATCCTTAATCATCAGGGAAATGCAAAT
CAAAACAACCCTGAGATTCCACACCACACCAGTCAGAATGGCTAAGATAA
AAAATTCAGGGACAGCAGATGCTGGCAAGAATGTGGAGAAAGAGGAACAC
TCCTCTATTGTTGTTGGTATTGCAAGCTTGTACAACTACTCTGGAAATCA
GTCTGGTGGTTCCTCAGAAAATTGGATATAGTGCTACCGGAAGATCCAGC
AATACCTCTCCTGGGCATATATCCAGAAGATGTCCCAACCGTTAAGAAGG
ACACTTGCTCCACAATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGC
TGGAAAGAACCCAGATGCCCCTCAACAGAGAAATGGATACAGAAAATGTG
GTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTA
TGAAATTCCTAGCCAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAG
GTAACACATTCACAAAGAAACTCACACAATATGTACTCACTGATAAGTGG
ATATTAGCCCCAAACCTAGGATACCCAAGATATAAGATACAATTTGCTAA
ACAC

Query= MSMg01no095_m07.b1 MSMg01no095_m07.b1 CHROMAT_FILE:
MSMg01no095_m07.b1 PHD_FILE: MSMg01no095_m07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:54 2005
         (656 letters)



>mm_chr2_12395541_12396596
          Length = 1056

 Score = 1187 bits (614), Expect = 0.0
 Identities = 646/664 (97%), Gaps = 13/664 (1%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattctggttacagaaaattggtaacttgtccatagaacaactaccatgttcttgtac 65
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 193 ggaattctggttacagaaaattggtaacttgttcatagaacaactaccatgttcttgtac 252

                                                                       
Query: 66  ctgatacttgtccttcgtttcctatggtttaaatagcatgaaaagtacttgtttgacagt 125
            |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 gtgatacttgtccttcgtttcctatggtttaaatagcatgaaaagtacttgtttgacagt 312

                                                                       
Query: 126 atgtctcaatgggtaagagtatttgtc-aagtctactgaattgaatttgatccctgaatc 184
           |||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||
Sbjct: 313 atgtctcaatgggtaagagtgtttgtcaaagtctactgaattgaatttgatccctgaatc 372

                                                                       
Query: 185 ccatgtaaagatagacagaaagaacacactacatacagttgtcctctgacctctatacac 244
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 373 ccatgtaaagatagacagaaagaacacactacacacagttgtcctctgacctctatacac 432

                                                                       
Query: 245 acatcaaggcattggtctcttgaaccaacatgtgtgtgcagggactcacacacgt----- 299
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||     
Sbjct: 433 acatcaaggcattggtctcttgaaccaacatgtgtgtgcagggactcacacacgtacaca 492

                                                                       
Query: 300 -------acacacacacacacacacacacacacacacacaccctctcccccaccaacaca 352
                  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cacacacacacacacacacacacacacacacacacacacaccctctcccccaccaacaca 552

                                                                       
Query: 353 catgaaaagaaatattaaaggatccaaaagatacacagccattaggcaatcacctctggg 412
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 catgaaaagaaatattaaaagatccaaaagatacacagccattaggcaatcacctctggg 612

                                                                       
Query: 413 gattcttcggatggcctttattactaaagatagaattagtaaagccaactaataaaatac 472
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 gattcttcggatggcctttattactaaagatagaattagtaaagccaactaataaaatac 672

                                                                       
Query: 473 taagcatttgatgcattattaggggatacagtctctatatatgaaaaaattcttctacga 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 taagcatttgatgcattattaggggatacagtctctatatatgaaaaaattcttctacga 732

                                                                       
Query: 533 gtatttcttgagccagagtctctgtagactctaagtttaaatctgatcgtaatataatat 592
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 733 gtatttcttgagccagagtctctgtagactctaagtttaaatctgatcgtaatataatat 792

                                                                       
Query: 593 atgcctcctgtagatggagaagatgttcctagtcacattggtacagctcctttggatcat 652
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 793 atgcctcctgtagatggagaagatgttcctagtcacattggtacagctcctttggatcat 852

               
Query: 653 gatt 656
           ||||
Sbjct: 853 gatt 856


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 70
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 656
Length of database: 1056
Length adjustment: 10
Effective length of query: 646
Effective length of database: 1046
Effective search space:   675716
Effective search space used:   675716
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)