BAC Information

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BAC

Clone NameMSMg01-095M08
Chromosome2 (Build37)
Map Location 30,423,884 - 30,424,270
singlet/doubletsinglet
Overlap genenone
Upstream geneRapgef1, LOC433415, OTTMUSG00000012686, Trub2, Coq4, Slc27a4, Urm1, LOC100041002, Ceecam1, Odf2, Gle1l, Spna2, LOC665532, Wdr34, Set, Pkn3, Zdhhc12, Zer1, LOC100041114, Tbc1d13, Slc39a1-ps, Endog, D2Wsu81e, Ccbl1, 1700084E18Rik, Lrrc8a, Phyhd1, Dolk, Nup188, Sh3glb2, 5730472N09Rik, Dolpp1, Crat, Ppp2r4, Ier5l
Downstream geneCstad, EG665645, 1700001O22Rik, 2610205E22Rik, Asb6, Prrx2, Ptges, Ppia-ps2_387.1, Tor1b, Tor1a, BC005624, Usp20, Fnbp1, Gpr107, Freq, LOC622345, LOC670182, LOC665700, BC034076, Ass1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-095M08.T7 (MSMg01no095_m08.b1)MSMg01-095M08.TJ (MSMg01no095_m08.g1)
ACCAG312606AG312607
length703695
length of high quality
(start - end)
414 (44 - 457)284 (75 - 358)
definitionCHROMAT_FILE: MSMg01no095_m08.b1 PHD_FILE: MSMg01no095_m08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:54 2005CHROMAT_FILE: MSMg01no095_m08.g1 PHD_FILE: MSMg01no095_m08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 17:51:54 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTTCCACATGACAAAGTGTTACCCAAACATCTATGAGGTGCCTTAGAG
CATCAGCAAACACTTCAAAACAGCCAGCACTCCAAATTATCCCTCTTCCC
AGGATCCCATCCCATCTTGTCTTCTGAGGATCCAGATGGGAGAGCAAGGG
GAAGACAGCAAACAGACCACCCAAGCAGCCTGGCATACACCTGTCACCCT
AGCACTTGGGGGGAGGTGGAGGCAGGAGGATCAAGAGTTTGAGGGCAGCC
TGGGCTACATAAAGCTCTGTAAAACAAAACAAAACAAAACAAAAACAAAA
ACAAAAACAAAAACAAAGCCAAGTAAAGCCATAGTTAAATTACAAAGTGC
CAGGGAGGGAGCTGCCATTTGCAACAAAGCAGGTGGAGGAGGAGGGTGGG
GTGGGGTGCCTCTTCTTCTCCCCTCCCCGCTTTTCCCCTCGGCTATTTAT
TTCCTCCTCCTATTTACTTTTCTCCTTCTGGCCTCCTCTCCTGTTTCTCC
CCCACCATTCATATCCCCCTACCAAACTACCTCCCCCCCATCTATCATCA
TTACTACCTCGCAACACTAATATTTTTTCTCCCCCTATTTTTACTCGTCT
ATTTCATTTATTCCTCATTTTTTACTTTCTACCTTTTATAACCCCACCCC
TTA
CGATGATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXCAGGCTCTGCCTGGGGTTTTTAGTTT
TGGACTTGTGCTGGCTTAGTTTTATGTCAACTTGACACAAACGAGAGTAG
TGGGAAGAGGGAACTTCAACTGAGAAAAACCCTCACCAGATTGGTCTGTG
GGCAAGTCTGTGGTATGTTTTCTTGATTGCTAACTGATATGAGAGGGCCC
AGCCCACTGTGGTGGGACCACCCCTGGGCTGGGATCCTTGGTGCTATAAG
AAAGCAGACTGAGCAAGCCACGAGGAGCAAGCCAGTAAGCAGCACCCCTC
CATGGCCTGTGCTTCAGCTCCTGCTCCAGGTTTCTGCCCTGTGTGAGTTC
CTAAGGTTGCTTTTGGCCATGACGTTCTATCACAGTAATACAAACCCTGC
CTGGGACAGGACCCCTTGCTCATCTGCCTCACTGATGGCTACAGGGCATT
TCCTAGGCCACACAGCAGGTTACTGTCACTACAGGTCCAGGTTGGAGTCA
CCTATTCACACCAGTTATGGGTGCTTTCGATTAAATAAAGATTCCTGGGC
CCAGTGATAACCTCTAGGATAAGTCTGGATACCCCTTTTAGATCCAGACA
CCCTCATTTCTAATCCTACTGTCTCTTACTCTTGAACGTTTATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no095_m08.b1 MSMg01no095_m08.b1 CHROMAT_FILE:
MSMg01no095_m08.b1 PHD_FILE: MSMg01no095_m08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 17:51:54 2005
         (414 letters)



>mm_chr2_30423884_30424697
          Length = 814

 Score =  706 bits (365), Expect = 0.0
 Identities = 379/387 (97%), Gaps = 6/387 (1%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttccacatgacaaagtgttacccaaacatctatgaggtgccttagagcatcagc 64
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 gaattcttccacatgataaagtgttacccaaacatctatgaggtgccttagagcatcagc 328

                                                                       
Query: 65  aaacacttcaaaacagccagcactccaaattatccctcttcccaggatcccatcccatct 124
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 aaagacttcaaaacagccagcactccaaattatccctcttcccaggatcccatcccatct 268

                                                                       
Query: 125 tgtcttctgaggatccagatgggagagcaaggggaagacagcaaacagaccacccaagca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tgtcttctgaggatccagatgggagagcaaggggaagacagcaaacagaccacccaagca 208

                                                                       
Query: 185 gcctggcatacacctgtcaccctagcacttggggggaggtggaggcaggaggatcaagag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 207 gcctggcatacacctgtcaccctagcacttggggggaggtggaggcaggaggatcaagag 148

                                                                       
Query: 245 tttgagggcagcctgggctacataaagctctgtaaaacaaaacaaaacaaaacaaaaaca 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 147 tttgagggcagcctgggctacataaagctctgtaaaacaaaacaaaacaaaacaaaaaca 88

                                                                       
Query: 305 aaaacaaaaacaaaaacaaa------gccaagtaaagccatagttaaattacaaagtgcc 358
           ||||||||||||||||||||      ||||||||||||||||||||||||||||||||||
Sbjct: 87  aaaacaaaaacaaaaacaaaaacaaagccaagtaaagccatagttaaattacaaagtgcc 28

                                      
Query: 359 agggagggagctgccatttgcaacaaa 385
           |||||||||||||||||||||||||||
Sbjct: 27  agggagggagctgccatttgcaacaaa 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 35
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 414
Length of database: 814
Length adjustment: 9
Effective length of query: 405
Effective length of database: 805
Effective search space:   326025
Effective search space used:   326025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)